CID 16204888

Oligo c 5'-capped thiol

Structural Information

Molecular Formula
C198H230N57O103P15S17
SMILES
COC1=CC=C(C=C1)C(CCCCCCSSOCC2C(C(C(O2)N3C=CC(=NC3=O)N)O)OP(=S)(O)OCC4C(C(C(O4)N5C=CC(=O)NC5=O)O)OP(=S)(O)OCC6C(C(C(O6)N7C=CC(=NC7=O)N)O)OP(=S)(O)OCC8C(C(C(O8)N9C=CC(=NC9=O)N)O)OP(=S)(O)OCC1C(C(C(O1)N1C=CC(=NC1=O)N)O)OP(=S)(O)OCC1C(C(C(O1)N1C=NC2=C(N=CN=C21)N)O)OP(=S)(O)OCC1C(C(C(O1)N1C=NC2=C1N=C(NC2=O)N)O)OP(=S)(O)OCC1C(C(C(O1)N1C=NC2=C1N=C(NC2=O)N)O)OP(=S)(O)OCC1C(C(C(O1)N1C=CC(=NC1=O)N)O)OP(=S)(O)OCC1C(C(C(O1)N1C=CC(=O)NC1=O)O)OP(=S)(O)OCC1C(C(C(O1)N1C=CC(=NC1=O)N)O)OP(=S)(O)OCC1C(C(C(O1)N1C=NC2=C(N=CN=C21)N)O)OP(=S)(O)OCC1C(C(C(O1)N1C=NC2=C1N=C(NC2=O)N)O)OP(=S)(O)OCC1C(C(C(O1)N1C=NC2=C(N=CN=C21)N)O)OP(=O)(OCC1C(C(C(O1)N1C=CC(=O)NC1=O)O)OP(=S)(O)OCC1C(C(C(O1)N1C=CC(=NC1=O)N)O)OC(=O)C1=CC2=C(C=C1)C(=O)OC21C2=C(C=C(C=C2)O)OC2=C1C=CC(=C2)O)S)(C1=CC=CC=C1)C1=CC=C(C=C1)OC
InChI
InChI=1S/C198H230N57O103P15S17/c1-307-82-19-13-78(14-20-82)197(77-10-6-5-7-11-77,79-15-21-83(308-2)22-16-79)36-8-3-4-9-47-389-390-324-66-105-153(131(270)172(341-105)246-43-32-112(205)230-193(246)288)358-373(306,388)317-59-98-146(130(269)175(334-98)249-46-35-115(260)233-196(249)291)351-364(297,379)312-54-92-140(124(263)168(328-92)242-39-28-108(201)226-189(242)284)346-360(293,375)310-52-91-139(123(262)167(327-91)241-38-27-107(200)225-188(241)283)345-361(294,376)311-53-93-142(126(265)170(329-93)244-41-30-110(203)228-191(244)286)348-365(298,380)318-60-99-149(134(273)178(335-99)252-72-220-118-156(208)214-69-217-159(118)252)354-370(303,385)322-64-103-152(137(276)181(339-103)255-75-223-121-162(255)236-186(211)239-165(121)279)357-372(305,387)323-65-104-150(135(274)179(340-104)253-73-221-119-160(253)234-184(209)237-163(119)277)355-368(301,383)315-56-95-141(125(264)169(331-95)243-40-29-109(202)227-190(243)285)347-362(295,377)314-57-97-145(129(268)174(333-97)248-45-34-114(259)232-195(248)290)350-363(296,378)313-55-94-143(127(266)171(330-94)245-42-31-111(204)229-192(245)287)349-366(299,381)319-61-100-148(133(272)177(336-100)251-71-219-117-155(207)213-68-216-158(117)251)353-369(302,384)321-63-102-151(136(275)180(338-102)254-74-222-120-161(254)235-185(210)238-164(120)278)356-371(304,386)320-62-101-147(132(271)176(337-101)250-70-218-116-154(206)212-67-215-157(116)250)352-367(300,382)316-58-96-144(128(267)173(332-96)247-44-33-113(258)231-194(247)289)344-359(292,374)309-51-90-138(122(261)166(326-90)240-37-26-106(199)224-187(240)282)342-182(280)76-12-23-84-87(48-76)198(343-183(84)281)85-24-17-80(256)49-88(85)325-89-50-81(257)18-25-86(89)198/h5-7,10-35,37-46,48-50,67-75,90-105,122-153,166-181,256-257,261-276H,3-4,8-9,36,47,51-66H2,1-2H3,(H,292,374)(H,293,375)(H,294,376)(H,295,377)(H,296,378)(H,297,379)(H,298,380)(H,299,381)(H,300,382)(H,301,383)(H,302,384)(H,303,385)(H,304,386)(H,305,387)(H,306,388)(H2,199,224,282)(H2,200,225,283)(H2,201,226,284)(H2,202,227,285)(H2,203,228,286)(H2,204,229,287)(H2,205,230,288)(H2,206,212,215)(H2,207,213,216)(H2,208,214,217)(H,231,258,289)(H,232,259,290)(H,233,260,291)(H3,209,234,237,277)(H3,210,235,238,278)(H3,211,236,239,279)
InChIKey
KHIVSSSRYNNXIK-UHFFFAOYSA-N
Compound name
[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[7,7-bis(4-methoxyphenyl)-7-phenylheptyl]disulfanyl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(2,4-dioxopyrimidin-1-yl)-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(2,4-dioxopyrimidin-1-yl)-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)-4-hydroxyoxolan-3-yl]oxy-sulfanylphosphoryl]oxymethyl]-5-(2,4-dioxopyrimidin-1-yl)-4-hydroxyoxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)-4-hydroxyoxolan-3-yl] 3',6'-dihydroxy-1-oxospiro[2-benzofuran-3,9'-xanthene]-5-carboxylate
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

6061.583 Da
Monoisotopic Mass

-11.9
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6062.5903 311.5
[M+Na]+ 6084.5722 311.5
[M-H]- 6060.5757 311.5
[M+NH4]+ 6079.6168 311.5
[M+K]+ 6100.5462 311.5
[M+H-H2O]+ 6044.5803 311.5
[M+HCOO]- 6106.5812 311.5
[M+CH3COO]- 6120.5969 311.5
[M+Na-2H]- 6082.5577 311.5
[M]+ 6061.5825 311.5
[M]- 6061.5835 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.