CID 16204696

5'-dgggggggggg-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C100H121N50O49P9S9
SMILES
C1C(C(OC1N2C=NC3=C2N=C(NC3=O)N)COP(=S)(O)OC4CC(OC4COP(=S)(O)OC5CC(OC5COP(=S)(O)OC6CC(OC6COP(=O)(OC7CC(OC7COP(=S)(O)OC8CC(OC8COP(=S)(O)OC9CC(OC9COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1CO)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)S)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)O
InChI
InChI=1S/C100H121N50O49P9S9/c101-91-121-71-61(81(153)131-91)111-21-141(71)51-1-31(152)42(182-51)12-172-200(163,209)192-33-3-53(143-23-113-63-73(143)123-93(103)133-83(63)155)184-44(33)14-174-202(165,211)194-35-5-55(145-25-115-65-75(145)125-95(105)135-85(65)157)186-46(35)16-176-204(167,213)196-37-7-57(147-27-117-67-77(147)127-97(107)137-87(67)159)188-48(37)18-178-206(169,215)198-39-9-59(149-29-119-69-79(149)129-99(109)139-89(69)161)190-50(39)20-180-208(171,217)199-40-10-60(150-30-120-70-80(150)130-100(110)140-90(70)162)189-49(40)19-179-207(170,216)197-38-8-58(148-28-118-68-78(148)128-98(108)138-88(68)160)187-47(38)17-177-205(168,214)195-36-6-56(146-26-116-66-76(146)126-96(106)136-86(66)158)185-45(36)15-175-203(166,212)193-34-4-54(144-24-114-64-74(144)124-94(104)134-84(64)156)183-43(34)13-173-201(164,210)191-32-2-52(181-41(32)11-151)142-22-112-62-72(142)122-92(102)132-82(62)154/h21-60,151-152H,1-20H2,(H,163,209)(H,164,210)(H,165,211)(H,166,212)(H,167,213)(H,168,214)(H,169,215)(H,170,216)(H,171,217)(H3,101,121,131,153)(H3,102,122,132,154)(H3,103,123,133,155)(H3,104,124,134,156)(H3,105,125,135,157)(H3,106,126,136,158)(H3,107,127,137,159)(H3,108,128,138,160)(H3,109,129,139,161)(H3,110,130,140,162)
InChIKey
PHKHKNJEVDQSNC-UHFFFAOYSA-N
Compound name
2-amino-9-[5-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-sulfanylphosphoryl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-2-yl]-1H-purin-6-one
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

3372.3638 Da
Monoisotopic Mass

-9.2
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 3373.3711 304.8
[M+Na]+ 3395.3530 305.8
[M-H]- 3371.3565 304.7
[M+NH4]+ 3390.3976 305.2
[M+K]+ 3411.3270 305.3
[M+H-H2O]+ 3355.3611 304.9
[M+HCOO]- 3417.3620 305.3
[M+CH3COO]- 3431.3777 305.4
[M+Na-2H]- 3393.3385 306.3
[M]+ 3372.3633 306.0
[M]- 3372.3643 306.0
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.