CID 16186156

18-mer oligonucleotide 5'-d[g-sp(atccatgtcagtgacac)]-3'

Structural Information

Molecular Formula
C175H221N68O88P17S17
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3COP(=S)(O)OC4CC(OC4COP(=S)(O)OC5CC(OC5COP(=S)(O)OC6CC(OC6COP(=S)(O)OC7CC(OC7COP(=S)(O)OC8CC(OC8COP(=S)(O)OC9CC(OC9COP(=S)(O)OC1CC(OC1CO)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C(N=CN=C21)N)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)O)S
InChI
InChI=1S/C175H221N68O88P17S17/c1-69-33-231(172(259)222-155(69)246)119-21-79(97(303-119)43-286-343(274,360)326-84-26-124(236-61-201-133-142(182)191-56-196-147(133)236)307-101(84)47-281-333(264,350)315-74-16-128(297-91(74)37-244)240-65-205-137-151(240)214-163(186)218-159(137)250)320-338(269,355)283-40-94-75(17-115(300-94)227-11-6-110(177)210-168(227)255)316-334(265,351)282-39-93-76(18-116(299-93)228-12-7-111(178)211-169(228)256)317-336(267,353)291-49-103-86(28-126(309-103)238-63-203-135-144(184)193-58-198-149(135)238)327-344(275,361)287-44-98-81(23-121(304-98)233-35-71(3)157(248)224-174(233)261)322-340(271,357)294-52-106-88(30-129(312-106)241-66-206-138-152(241)215-164(187)219-160(138)251)329-345(276,362)288-45-99-80(22-120(305-99)232-34-70(2)156(247)223-173(232)260)321-339(270,356)284-41-95-77(19-117(301-95)229-13-8-112(179)212-170(229)257)318-337(268,354)292-50-104-87(29-127(310-104)239-64-204-136-145(185)194-59-199-150(136)239)328-347(278,364)296-54-108-89(31-130(314-108)242-67-207-139-153(242)216-165(188)220-161(139)252)330-346(277,363)289-46-100-82(24-122(306-100)234-36-72(4)158(249)225-175(234)262)323-341(272,358)295-53-107-90(32-131(313-107)243-68-208-140-154(243)217-166(189)221-162(140)253)331-348(279,365)293-51-105-85(27-125(311-105)237-62-202-134-143(183)192-57-197-148(134)237)325-342(273,359)285-42-96-78(20-118(302-96)230-14-9-113(180)213-171(230)258)319-335(266,352)290-48-102-83(25-123(308-102)235-60-200-132-141(181)190-55-195-146(132)235)324-332(263,349)280-38-92-73(245)15-114(298-92)226-10-5-109(176)209-167(226)254/h5-14,33-36,55-68,73-108,114-131,244-245H,15-32,37-54H2,1-4H3,(H,263,349)(H,264,350)(H,265,351)(H,266,352)(H,267,353)(H,268,354)(H,269,355)(H,270,356)(H,271,357)(H,272,358)(H,273,359)(H,274,360)(H,275,361)(H,276,362)(H,277,363)(H,278,364)(H,279,365)(H2,176,209,254)(H2,177,210,255)(H2,178,211,256)(H2,179,212,257)(H2,180,213,258)(H2,181,190,195)(H2,182,191,196)(H2,183,192,197)(H2,184,193,198)(H2,185,194,199)(H,222,246,259)(H,223,247,260)(H,224,248,261)(H,225,249,262)(H3,186,214,218,250)(H3,187,215,219,251)(H3,188,216,220,252)(H3,189,217,221,253)
InChIKey
NSPRDRVDRSOYJP-UHFFFAOYSA-N
Compound name
1-[4-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

5752.57 Da
Monoisotopic Mass

-6.8
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 5753.5773 311.5
[M+Na]+ 5775.5592 311.5
[M-H]- 5751.5627 311.5
[M+NH4]+ 5770.6038 311.5
[M+K]+ 5791.5332 311.5
[M+H-H2O]+ 5735.5673 311.5
[M+HCOO]- 5797.5682 311.5
[M+CH3COO]- 5811.5839 311.5
[M+Na-2H]- 5773.5447 311.5
[M]+ 5752.5695 311.5
[M]- 5752.5705 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.