CID 16186155

18-mer oligonucleotide 5'-d(gatccatgtcagtgacac)-3'

Structural Information

Molecular Formula
C175H221N68O105P17
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OC3CC(OC3COP(=O)(O)OC4CC(OC4COP(=O)(O)OC5CC(OC5COP(=O)(O)OC6CC(OC6COP(=O)(O)OC7CC(OC7COP(=O)(O)OC8CC(OC8COP(=O)(O)OC9CC(OC9COP(=O)(O)OC1CC(OC1CO)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C(N=CN=C21)N)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)O
InChI
InChI=1S/C175H221N68O105P17/c1-69-33-231(172(259)222-155(69)246)119-21-79(97(320-119)43-303-360(285,286)343-84-26-124(236-61-201-133-142(182)191-56-196-147(133)236)324-101(84)47-298-350(265,266)332-74-16-128(314-91(74)37-244)240-65-205-137-151(240)214-163(186)218-159(137)250)337-355(275,276)300-40-94-75(17-115(317-94)227-11-6-110(177)210-168(227)255)333-351(267,268)299-39-93-76(18-116(316-93)228-12-7-111(178)211-169(228)256)334-353(271,272)308-49-103-86(28-126(326-103)238-63-203-135-144(184)193-58-198-149(135)238)344-361(287,288)304-44-98-81(23-121(321-98)233-35-71(3)157(248)224-174(233)261)339-357(279,280)311-52-106-88(30-129(329-106)241-66-206-138-152(241)215-164(187)219-160(138)251)346-362(289,290)305-45-99-80(22-120(322-99)232-34-70(2)156(247)223-173(232)260)338-356(277,278)301-41-95-77(19-117(318-95)229-13-8-112(179)212-170(229)257)335-354(273,274)309-50-104-87(29-127(327-104)239-64-204-136-145(185)194-59-199-150(136)239)345-364(293,294)313-54-108-89(31-130(331-108)242-67-207-139-153(242)216-165(188)220-161(139)252)347-363(291,292)306-46-100-82(24-122(323-100)234-36-72(4)158(249)225-175(234)262)340-358(281,282)312-53-107-90(32-131(330-107)243-68-208-140-154(243)217-166(189)221-162(140)253)348-365(295,296)310-51-105-85(27-125(328-105)237-62-202-134-143(183)192-57-197-148(134)237)342-359(283,284)302-42-96-78(20-118(319-96)230-14-9-113(180)213-171(230)258)336-352(269,270)307-48-102-83(25-123(325-102)235-60-200-132-141(181)190-55-195-146(132)235)341-349(263,264)297-38-92-73(245)15-114(315-92)226-10-5-109(176)209-167(226)254/h5-14,33-36,55-68,73-108,114-131,244-245H,15-32,37-54H2,1-4H3,(H,263,264)(H,265,266)(H,267,268)(H,269,270)(H,271,272)(H,273,274)(H,275,276)(H,277,278)(H,279,280)(H,281,282)(H,283,284)(H,285,286)(H,287,288)(H,289,290)(H,291,292)(H,293,294)(H,295,296)(H2,176,209,254)(H2,177,210,255)(H2,178,211,256)(H2,179,212,257)(H2,180,213,258)(H2,181,190,195)(H2,182,191,196)(H2,183,192,197)(H2,184,193,198)(H2,185,194,199)(H,222,246,259)(H,223,247,260)(H,224,248,261)(H,225,249,262)(H3,186,214,218,250)(H3,187,215,219,251)(H3,188,216,220,252)(H3,189,217,221,253)
InChIKey
JSCDVDWWWGREPQ-UHFFFAOYSA-N
Compound name
[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphoryl]oxymethyl]oxolan-3-yl] [3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methyl hydrogen phosphate
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

5480.9585 Da
Monoisotopic Mass

-35.4
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 5481.9658 311.5
[M+Na]+ 5503.9477 311.5
[M-H]- 5479.9512 311.5
[M+NH4]+ 5498.9923 311.5
[M+K]+ 5519.9217 311.5
[M+H-H2O]+ 5463.9558 311.5
[M+HCOO]- 5525.9567 311.5
[M+CH3COO]- 5539.9724 311.5
[M+Na-2H]- 5501.9332 311.5
[M]+ 5480.9580 311.5
[M]- 5480.9590 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.