CID 16133923

2nh2(c3) oligonucleotide

Structural Information

Molecular Formula
C214H278N82O133P22
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(NCC(C)N)O)OP(=O)(O)OCC3C(CC(O3)N4C=NC5=C4N=C(NC5=O)N)OP(=O)(O)OCC6C(CC(O6)N7C=NC8=C7N=C(NC8=O)N)OP(=O)(O)OCC9C(CC(O9)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)O
InChI
InChI=1S/C214H278N82O133P22/c1-85-47-284(211(317)271-186(85)298)152-33-99(113(396-152)52-365-430(321,322)249-46-89(5)215)417-440(341,342)384-70-131-111(45-164(406-131)296-84-248-173-185(296)264-201(233)270-195(173)307)429-451(363,364)386-72-133-108(42-161(408-133)293-81-245-170-182(293)261-198(230)267-192(170)304)426-447(355,356)374-60-121-98(32-151(395-121)283-23-14-142(224)258-210(283)316)416-439(339,340)383-69-130-109(43-162(405-130)294-82-246-171-183(294)262-199(231)268-193(171)305)427-448(357,358)377-63-124-102(36-155(399-124)287-50-88(4)189(301)274-214(287)320)420-443(347,348)380-66-127-104(38-157(402-127)289-77-241-166-175(226)235-74-238-178(166)289)423-445(351,352)372-58-119-93(27-146(393-119)278-18-9-137(219)253-205(278)311)411-434(329,330)375-61-122-100(34-153(397-122)285-48-86(2)187(299)272-212(285)318)418-441(343,344)369-55-116-96(30-149(390-116)281-21-12-140(222)256-208(281)314)413-436(333,334)378-64-125-103(37-156(400-125)288-76-240-165-174(225)234-73-237-177(165)288)422-444(349,350)371-57-118-91(25-144(392-118)276-16-7-135(217)251-203(276)309)409-432(325,326)367-53-114-94(28-147(388-114)279-19-10-138(220)254-206(279)312)412-435(331,332)379-65-126-105(39-158(401-126)290-78-242-167-176(227)236-75-239-179(167)290)424-450(361,362)385-71-132-110(44-163(407-132)295-83-247-172-184(295)263-200(232)269-194(172)306)428-449(359,360)376-62-123-101(35-154(398-123)286-49-87(3)188(300)273-213(286)319)419-442(345,346)370-56-117-97(31-150(391-117)282-22-13-141(223)257-209(282)315)415-438(337,338)382-68-129-107(41-160(404-129)292-80-244-169-181(292)260-197(229)266-191(169)303)425-446(353,354)373-59-120-92(26-145(394-120)277-17-8-136(218)252-204(277)310)410-433(327,328)368-54-115-95(29-148(389-115)280-20-11-139(221)255-207(280)313)414-437(335,336)381-67-128-106(40-159(403-128)291-79-243-168-180(291)259-196(228)265-190(168)302)421-431(323,324)366-51-112-90(297)24-143(387-112)275-15-6-134(216)250-202(275)308/h6-23,47-50,73-84,89-133,143-164,297H,24-46,51-72,215H2,1-5H3,(H,323,324)(H,325,326)(H,327,328)(H,329,330)(H,331,332)(H,333,334)(H,335,336)(H,337,338)(H,339,340)(H,341,342)(H,343,344)(H,345,346)(H,347,348)(H,349,350)(H,351,352)(H,353,354)(H,355,356)(H,357,358)(H,359,360)(H,361,362)(H,363,364)(H2,216,250,308)(H2,217,251,309)(H2,218,252,310)(H2,219,253,311)(H2,220,254,312)(H2,221,255,313)(H2,222,256,314)(H2,223,257,315)(H2,224,258,316)(H2,225,234,237)(H2,226,235,238)(H2,227,236,239)(H2,249,321,322)(H,271,298,317)(H,272,299,318)(H,273,300,319)(H,274,301,320)(H3,228,259,265,302)(H3,229,260,266,303)(H3,230,261,267,304)(H3,231,262,268,305)(H3,232,263,269,306)(H3,233,264,270,307)
InChIKey
JLAQMYUBJFVBIC-UHFFFAOYSA-N
Compound name
[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-N-(2-aminopropyl)phosphonamidic acid
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

0
References

0
Patents

6805.174 Da
Monoisotopic Mass

-49.9
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6806.1813 311.5
[M+Na]+ 6828.1632 311.5
[M-H]- 6804.1667 311.5
[M+NH4]+ 6823.2078 311.5
[M+K]+ 6844.1372 311.5
[M+H-H2O]+ 6788.1713 311.5
[M+HCOO]- 6850.1722 311.5
[M+CH3COO]- 6864.1879 311.5
[M+Na-2H]- 6826.1487 311.5
[M]+ 6805.1735 311.5
[M]- 6805.1745 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.