5'-gcaggcaaaccatttgaatg-3' phosphorothioate (scrambled oligonucleotide)

Structural Information

Molecular Formula

C₁₉₆H₂₄₅N₈₀O₉₆P₁₉S₁₉

SMILES

CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3COP(=S)(O)OC4CC(OC4COP(=S)(O)OC5CC(OC5COP(=S)(O)OC6CC(OC6COP(=S)(O)OC7CC(OC7COP(=S)(O)OC8CC(OC8COP(=S)(O)OC9CC(OC9COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1CO)N1C=NC2=C1N=C(NC2=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=NC2=C(N=CN=C21)N)N1C=NC2=C(N=CN=C21)N)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C(N=CN=C21)N)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)O

InChI

InChI=1S/C196H245N80O96P19S19/c1-76-33-261(193(292)253-175(76)279)129-19-86(359-373(296,392)315-38-101-80(278)13-124(335-101)272-71-234-151-170(272)243-184(208)248-179(151)283)106(340-129)43-322-384(307,403)365-92-25-135(267-66-229-146-158(203)215-59-222-165(146)267)348-114(92)51-328-388(311,407)368-96-29-139(271-70-233-150-162(207)219-63-226-169(150)271)350-116(96)53-330-390(313,409)371-98-31-142(275-74-237-154-173(275)246-187(211)251-182(154)286)351-117(98)54-331-381(304,400)362-89-22-132(264-36-79(4)178(282)256-196(264)295)342-108(89)45-321-379(302,398)360-87-20-130(262-34-77(2)176(280)254-194(262)293)341-107(87)44-320-380(303,399)361-88-21-131(263-35-78(3)177(281)255-195(263)294)343-109(88)46-323-385(308,404)364-91-24-134(266-65-228-145-157(202)214-58-221-164(145)266)344-110(91)47-325-377(300,396)357-84-17-127(259-11-7-122(199)241-191(259)290)337-103(84)40-317-375(298,394)355-83-16-126(258-10-6-121(198)240-190(258)289)338-104(83)41-318-382(305,401)363-90-23-133(265-64-227-144-156(201)213-57-220-163(144)265)347-113(90)50-327-387(310,406)367-95-28-138(270-69-232-149-161(206)218-62-225-168(149)270)349-115(95)52-329-386(309,405)366-93-26-136(268-67-230-147-159(204)216-60-223-166(147)268)345-111(93)48-326-378(301,397)358-85-18-128(260-12-8-123(200)242-192(260)291)339-105(85)42-319-383(306,402)370-97-30-141(274-73-236-153-172(274)245-186(210)250-181(153)285)353-119(97)56-333-391(314,410)372-99-32-143(276-75-238-155-174(276)247-188(212)252-183(155)287)352-118(99)55-332-389(312,408)369-94-27-137(269-68-231-148-160(205)217-61-224-167(148)269)346-112(94)49-324-376(299,395)356-82-15-125(257-9-5-120(197)239-189(257)288)336-102(82)39-316-374(297,393)354-81-14-140(334-100(81)37-277)273-72-235-152-171(273)244-185(209)249-180(152)284/h5-12,33-36,57-75,80-119,124-143,277-278H,13-32,37-56H2,1-4H3,(H,296,392)(H,297,393)(H,298,394)(H,299,395)(H,300,396)(H,301,397)(H,302,398)(H,303,399)(H,304,400)(H,305,401)(H,306,402)(H,307,403)(H,308,404)(H,309,405)(H,310,406)(H,311,407)(H,312,408)(H,313,409)(H,314,410)(H2,197,239,288)(H2,198,240,289)(H2,199,241,290)(H2,200,242,291)(H2,201,213,220)(H2,202,214,221)(H2,203,215,222)(H2,204,216,223)(H2,205,217,224)(H2,206,218,225)(H2,207,219,226)(H,253,279,292)(H,254,280,293)(H,255,281,294)(H,256,282,295)(H3,208,243,248,283)(H3,209,244,249,284)(H3,210,245,250,285)(H3,211,246,251,286)(H3,212,247,252,287)

InChIKey

KWNQYVZPDXXQKN-UHFFFAOYSA-N

Compound name

1-[5-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]-5-methylpyrimidine-2,4-dione

Related CIDs

• CID 16133914