CID 16133605

5'-td(acgaccccca)td(ggagcccc)-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C190H243N74O97P19S19
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)OP(=S)(O)OCC3C(CC(O3)N4C=NC5=C(N=CN=C54)N)OP(=S)(O)OCC6C(CC(O6)N7C=CC(=NC7=O)N)OP(=S)(O)OCC8C(CC(O8)N9C=NC1=C9N=C(NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)O)S
InChI
InChI=1S/C190H243N74O97P19S19/c1-77-43-255(189(283)243-169(77)267)139-24-80(99(45-265)323-139)343-363(286,382)305-57-111-91(35-141(335-111)257-69-217-149-157(201)209-65-213-161(149)257)354-373(296,392)312-54-108-89(33-138(332-108)254-22-12-128(200)234-188(254)282)352-371(294,390)319-61-115-96(40-146(339-115)262-74-222-154-166(262)236-176(206)240-172(154)270)359-378(301,397)317-59-113-92(36-142(337-113)258-70-218-150-158(202)210-66-214-162(150)258)355-374(297,393)313-53-107-86(30-135(331-107)251-19-9-125(197)231-185(251)279)349-368(291,387)309-51-105-84(28-133(329-105)249-17-7-123(195)229-183(249)277)347-366(289,385)307-49-103-83(27-132(327-103)248-16-6-122(194)228-182(248)276)346-365(288,384)308-50-104-85(29-134(328-104)250-18-8-124(196)230-184(250)278)348-367(290,386)311-52-106-88(32-137(330-106)253-21-11-127(199)233-187(253)281)351-370(293,389)316-58-112-93(37-143(336-112)259-71-219-151-159(203)211-67-215-163(151)259)356-376(299,395)315-56-110-90(34-140(334-110)256-44-78(2)170(268)244-190(256)284)353-372(295,391)320-62-116-97(41-147(340-116)263-75-223-155-167(263)237-177(207)241-173(155)271)361-380(303,399)322-64-118-98(42-148(342-118)264-76-224-156-168(264)238-178(208)242-174(156)272)360-379(302,398)318-60-114-94(38-144(338-114)260-72-220-152-160(204)212-68-216-164(152)260)357-377(300,396)321-63-117-95(39-145(341-117)261-73-221-153-165(261)235-175(205)239-171(153)269)358-375(298,394)314-55-109-87(31-136(333-109)252-20-10-126(198)232-186(252)280)350-369(292,388)310-48-102-82(26-131(326-102)247-15-5-121(193)227-181(247)275)345-364(287,383)306-47-101-81(25-130(325-101)246-14-4-120(192)226-180(246)274)344-362(285,381)304-46-100-79(266)23-129(324-100)245-13-3-119(191)225-179(245)273/h3-22,43-44,65-76,79-118,129-148,265-266H,23-42,45-64H2,1-2H3,(H,285,381)(H,286,382)(H,287,383)(H,288,384)(H,289,385)(H,290,386)(H,291,387)(H,292,388)(H,293,389)(H,294,390)(H,295,391)(H,296,392)(H,297,393)(H,298,394)(H,299,395)(H,300,396)(H,301,397)(H,302,398)(H,303,399)(H2,191,225,273)(H2,192,226,274)(H2,193,227,275)(H2,194,228,276)(H2,195,229,277)(H2,196,230,278)(H2,197,231,279)(H2,198,232,280)(H2,199,233,281)(H2,200,234,282)(H2,201,209,213)(H2,202,210,214)(H2,203,211,215)(H2,204,212,216)(H,243,267,283)(H,244,268,284)(H3,205,235,239,269)(H3,206,236,240,270)(H3,207,237,241,271)(H3,208,238,242,272)
InChIKey
MWWOTRMWEWKPGP-UHFFFAOYSA-N
Compound name
1-[4-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

0
References

0
Patents

6308.6064 Da
Monoisotopic Mass

-10.1
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6309.6137 311.5
[M+Na]+ 6331.5956 311.5
[M-H]- 6307.5991 311.5
[M+NH4]+ 6326.6402 311.5
[M+K]+ 6347.5696 311.5
[M+H-H2O]+ 6291.6037 311.5
[M+HCOO]- 6353.6046 311.5
[M+CH3COO]- 6367.6203 311.5
[M+Na-2H]- 6329.5811 311.5
[M]+ 6308.6059 311.5
[M]- 6308.6069 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.