CID 16133602

5'-d[cttgcggtattcggaa]-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C157H198N59O81P15S15
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3CO)N4C=CC(=NC4=O)N)OP(=S)(O)OCC5C(CC(O5)N6C=C(C(=O)NC6=O)C)OP(=S)(O)OCC7C(CC(O7)N8C=NC9=C8N=C(NC9=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)O)S
InChI
InChI=1S/C157H198N59O81P15S15/c1-60-28-204(153(232)196-135(60)219)104-16-69(85(271-104)37-253-299(238,314)283-66-13-101(267-81(66)33-217)201-9-6-97(158)183-150(201)229)287-303(242,318)256-39-87-72(19-107(273-87)207-31-63(4)138(222)199-156(207)235)290-306(245,321)264-46-94-76(23-111(280-94)212-55-178-119-130(212)186-145(164)191-140(119)224)293-307(246,322)255-36-84-68(15-103(270-84)203-11-8-99(160)185-152(203)231)285-301(240,316)263-45-93-78(25-113(279-93)214-57-180-121-132(214)188-147(166)193-142(121)226)296-311(250,326)265-47-95-77(24-112(281-95)213-56-179-120-131(213)187-146(165)192-141(120)225)294-309(248,324)259-41-89-73(20-108(275-89)208-32-64(5)139(223)200-157(208)236)289-305(244,320)260-43-91-75(22-110(277-91)211-54-177-118-126(163)171-51-174-129(118)211)292-308(247,323)258-40-88-71(18-106(274-88)206-30-62(3)137(221)198-155(206)234)288-304(243,319)257-38-86-70(17-105(272-86)205-29-61(2)136(220)197-154(205)233)286-302(241,317)254-35-83-67(14-102(269-83)202-10-7-98(159)184-151(202)230)284-300(239,315)262-44-92-79(26-114(278-92)215-58-181-122-133(215)189-148(167)194-143(122)227)297-312(251,327)266-48-96-80(27-115(282-96)216-59-182-123-134(216)190-149(168)195-144(123)228)295-310(249,325)261-42-90-74(21-109(276-90)210-53-176-117-125(162)170-50-173-128(117)210)291-298(237,313)252-34-82-65(218)12-100(268-82)209-52-175-116-124(161)169-49-172-127(116)209/h6-11,28-32,49-59,65-96,100-115,217-218H,12-27,33-48H2,1-5H3,(H,237,313)(H,238,314)(H,239,315)(H,240,316)(H,241,317)(H,242,318)(H,243,319)(H,244,320)(H,245,321)(H,246,322)(H,247,323)(H,248,324)(H,249,325)(H,250,326)(H,251,327)(H2,158,183,229)(H2,159,184,230)(H2,160,185,231)(H2,161,169,172)(H2,162,170,173)(H2,163,171,174)(H,196,219,232)(H,197,220,233)(H,198,221,234)(H,199,222,235)(H,200,223,236)(H3,164,186,191,224)(H3,165,187,192,225)(H3,166,188,193,226)(H3,167,189,194,227)(H3,168,190,195,228)
InChIKey
OMIPRXUELKEIHF-UHFFFAOYSA-N
Compound name
1-[4-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(6-aminopurin-9-yl)-3-[[5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

0
References

0
Patents

5149.5063 Da
Monoisotopic Mass

-6.5
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 5150.5136 311.5
[M+Na]+ 5172.4955 311.5
[M-H]- 5148.4990 311.5
[M+NH4]+ 5167.5401 311.5
[M+K]+ 5188.4695 311.5
[M+H-H2O]+ 5132.5036 311.5
[M+HCOO]- 5194.5045 311.5
[M+CH3COO]- 5208.5202 311.5
[M+Na-2H]- 5170.4810 311.5
[M]+ 5149.5058 311.5
[M]- 5149.5068 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.