CID 16133572

5'-d[ttggggttggggttgggg]-3' phosphorothioate oligonucleotide

Structural Information

Molecular Formula
C180H223N72O95P17S17
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)OP(=S)(O)OCC3C(CC(O3)N4C=C(C(=O)NC4=O)C)OP(=S)(O)OCC5C(CC(O5)N6C=NC7=C6N=C(NC7=O)N)OP(=S)(O)OCC8C(CC(O8)N9C=NC1=C9N=C(NC1=O)N)OP(=O)(OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)O)S
InChI
InChI=1S/C180H223N72O95P17S17/c1-61-25-235(175(273)229-145(61)255)104-8-68(85(31-253)313-104)331-349(280,366)297-33-87-69(9-105(315-87)236-26-62(2)146(256)230-176(236)274)334-352(283,369)302-39-93-77(17-113(321-93)245-53-197-125-137(245)209-167(185)221-155(125)265)340-359(290,376)309-45-99-83(23-119(327-99)251-59-203-131-143(251)215-173(191)227-161(131)271)346-363(294,380)311-47-101-81(21-117(329-101)249-57-201-129-141(249)213-171(189)225-159(129)269)344-361(292,378)306-42-96-75(15-111(324-96)243-51-195-123-135(243)207-165(183)219-153(123)263)338-356(287,373)301-37-91-71(11-107(319-91)238-28-64(4)148(258)232-178(238)276)333-351(282,368)299-35-89-73(13-109(317-89)240-30-66(6)150(260)234-180(240)278)336-354(285,371)304-41-95-79(19-115(323-95)247-55-199-127-139(247)211-169(187)223-157(127)267)342-360(291,377)310-46-100-84(24-120(328-100)252-60-204-132-144(252)216-174(192)228-162(132)272)347-364(295,381)312-48-102-82(22-118(330-102)250-58-202-130-142(250)214-172(190)226-160(130)270)345-362(293,379)307-43-97-76(16-112(325-97)244-52-196-124-136(244)208-166(184)220-154(124)264)339-355(286,372)300-36-90-70(10-106(318-90)237-27-63(3)147(257)231-177(237)275)332-350(281,367)298-34-88-72(12-108(316-88)239-29-65(5)149(259)233-179(239)277)335-353(284,370)303-40-94-78(18-114(322-94)246-54-198-126-138(246)210-168(186)222-156(126)266)341-358(289,375)308-44-98-80(20-116(326-98)248-56-200-128-140(248)212-170(188)224-158(128)268)343-357(288,374)305-38-92-74(14-110(320-92)242-50-194-122-134(242)206-164(182)218-152(122)262)337-348(279,365)296-32-86-67(254)7-103(314-86)241-49-193-121-133(241)205-163(181)217-151(121)261/h25-30,49-60,67-120,253-254H,7-24,31-48H2,1-6H3,(H,279,365)(H,280,366)(H,281,367)(H,282,368)(H,283,369)(H,284,370)(H,285,371)(H,286,372)(H,287,373)(H,288,374)(H,289,375)(H,290,376)(H,291,377)(H,292,378)(H,293,379)(H,294,380)(H,295,381)(H,229,255,273)(H,230,256,274)(H,231,257,275)(H,232,258,276)(H,233,259,277)(H,234,260,278)(H3,181,205,217,261)(H3,182,206,218,262)(H3,183,207,219,263)(H3,184,208,220,264)(H3,185,209,221,265)(H3,186,210,222,266)(H3,187,211,223,267)(H3,188,212,224,268)(H3,189,213,225,269)(H3,190,214,226,270)(H3,191,215,227,271)(H3,192,216,228,272)
InChIKey
GRLGSIMLQOYTCP-UHFFFAOYSA-N
Compound name
1-[4-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

0
References

0
Patents

5982.5625 Da
Monoisotopic Mass

-9.9
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 5983.5698 311.5
[M+Na]+ 6005.5517 311.5
[M-H]- 5981.5552 311.5
[M+NH4]+ 6000.5963 311.5
[M+K]+ 6021.5257 311.5
[M+H-H2O]+ 5965.5598 311.5
[M+HCOO]- 6027.5607 311.5
[M+CH3COO]- 6041.5764 311.5
[M+Na-2H]- 6003.5372 311.5
[M]+ 5982.5620 311.5
[M]- 5982.5630 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.