CID 16133543

5'-d[tggcgggactacgggggc]-3' phosphorothioate oligonucleotide

Structural Information

Molecular Formula
C176H219N76O89P17S17
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)OP(=S)(O)OCC3C(CC(O3)N4C=NC5=C4N=C(NC5=O)N)OP(=S)(O)OCC6C(CC(O6)N7C=NC8=C7N=C(NC8=O)N)OP(=S)(O)OCC9C(CC(O9)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)O)S
InChI
InChI=1S/C176H219N76O89P17S17/c1-63-29-239(175(271)233-149(63)255)109-12-66(83(31-253)307-109)325-343(274,360)291-39-91-74(20-114(315-91)244-54-200-126-140(244)214-162(184)224-152(126)258)334-353(284,370)301-43-95-75(21-115(319-95)245-55-201-127-141(245)215-163(185)225-153(127)259)333-350(281,367)294-35-87-69(15-108(311-87)238-10-6-104(180)212-174(238)270)328-346(277,363)299-42-94-77(23-117(318-94)247-57-203-129-143(247)217-165(187)227-155(129)261)337-355(286,372)303-46-98-80(26-120(322-98)250-60-206-132-146(250)220-168(190)230-158(132)264)339-356(287,373)302-44-96-78(24-118(320-96)248-58-204-130-144(248)218-166(188)228-156(130)262)335-351(282,368)297-38-90-72(18-112(314-90)242-52-198-124-136(182)194-50-196-138(124)242)332-349(280,366)292-33-85-67(13-106(309-85)236-8-4-102(178)210-172(236)268)326-344(275,361)295-36-88-70(16-110(312-88)240-30-64(2)150(256)234-176(240)272)329-347(278,364)296-37-89-71(17-111(313-89)241-51-197-123-135(181)193-49-195-137(123)241)331-348(279,365)293-34-86-68(14-107(310-86)237-9-5-103(179)211-173(237)269)327-345(276,362)298-41-93-76(22-116(317-93)246-56-202-128-142(246)216-164(186)226-154(128)260)336-354(285,371)304-47-99-81(27-121(323-99)251-61-207-133-147(251)221-169(191)231-159(133)265)340-358(289,375)306-48-100-82(28-122(324-100)252-62-208-134-148(252)222-170(192)232-160(134)266)341-357(288,374)305-45-97-79(25-119(321-97)249-59-205-131-145(249)219-167(189)229-157(131)263)338-352(283,369)300-40-92-73(19-113(316-92)243-53-199-125-139(243)213-161(183)223-151(125)257)330-342(273,359)290-32-84-65(254)11-105(308-84)235-7-3-101(177)209-171(235)267/h3-10,29-30,49-62,65-100,105-122,253-254H,11-28,31-48H2,1-2H3,(H,273,359)(H,274,360)(H,275,361)(H,276,362)(H,277,363)(H,278,364)(H,279,365)(H,280,366)(H,281,367)(H,282,368)(H,283,369)(H,284,370)(H,285,371)(H,286,372)(H,287,373)(H,288,374)(H,289,375)(H2,177,209,267)(H2,178,210,268)(H2,179,211,269)(H2,180,212,270)(H2,181,193,195)(H2,182,194,196)(H,233,255,271)(H,234,256,272)(H3,183,213,223,257)(H3,184,214,224,258)(H3,185,215,225,259)(H3,186,216,226,260)(H3,187,217,227,261)(H3,188,218,228,262)(H3,189,219,229,263)(H3,190,220,230,264)(H3,191,221,231,265)(H3,192,222,232,266)
InChIKey
XUZZLXJXPHNWID-UHFFFAOYSA-N
Compound name
1-[4-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

0
References

0
Patents

5890.5737 Da
Monoisotopic Mass

-11.0
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 5891.5810 311.5
[M+Na]+ 5913.5629 311.5
[M-H]- 5889.5664 311.5
[M+NH4]+ 5908.6075 311.5
[M+K]+ 5929.5369 311.5
[M+H-H2O]+ 5873.5710 311.5
[M+HCOO]- 5935.5719 311.5
[M+CH3COO]- 5949.5876 311.5
[M+Na-2H]- 5911.5484 311.5
[M]+ 5890.5732 311.5
[M]- 5890.5742 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.