CID 16133530

5'-d[tggagaccggggttggggaa]-3' phosphorothioate oligonucleotide

Structural Information

Molecular Formula
C198H244N87O98P19S19
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)OP(=S)(O)OCC3C(CC(O3)N4C=NC5=C4N=C(NC5=O)N)OP(=S)(O)OCC6C(CC(O6)N7C=NC8=C7N=C(NC8=O)N)OP(=S)(O)OCC9C(CC(O9)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)O)S
InChI
InChI=1S/C198H244N87O98P19S19/c1-70-28-268(196(304)263-169(70)288)118-9-74(93(31-286)345-118)365-385(308,404)327-40-102-82(17-124(354-102)275-59-228-139-158(275)241-183(205)252-172(139)291)374-396(319,415)338-45-107-88(23-130(359-107)281-65-234-145-164(281)247-189(211)258-178(145)297)377-395(318,414)334-39-101-81(16-123(353-101)274-58-227-138-153(204)219-54-223-157(138)274)372-392(315,411)337-43-105-86(21-128(357-105)279-63-232-143-162(279)245-187(209)256-176(143)295)376-394(317,413)333-38-100-80(15-122(352-100)273-57-226-137-152(203)218-53-222-156(137)273)371-390(313,409)329-34-96-75(10-116(348-96)266-6-4-113(199)239-194(266)302)366-386(309,405)328-33-95-76(11-117(347-95)267-7-5-114(200)240-195(267)303)367-387(310,406)335-41-103-84(19-126(355-103)277-61-230-141-160(277)243-185(207)254-174(141)293)378-397(320,416)341-47-109-90(25-132(361-109)283-67-236-147-166(283)249-191(213)260-180(147)299)382-401(324,420)343-49-111-89(24-131(363-111)282-66-235-146-165(282)248-190(212)259-179(146)298)380-399(322,418)339-44-106-83(18-125(358-106)276-60-229-140-159(276)242-184(206)253-173(140)292)373-391(314,410)331-36-98-77(12-119(350-98)269-29-71(2)170(289)264-197(269)305)368-388(311,407)330-35-97-78(13-120(349-97)270-30-72(3)171(290)265-198(270)306)369-389(312,408)336-42-104-85(20-127(356-104)278-62-231-142-161(278)244-186(208)255-175(142)294)379-398(321,417)342-48-110-91(26-133(362-110)284-68-237-148-167(284)250-192(214)261-181(148)300)383-402(325,421)344-50-112-92(27-134(364-112)285-69-238-149-168(285)251-193(215)262-182(149)301)381-400(323,419)340-46-108-87(22-129(360-108)280-64-233-144-163(280)246-188(210)257-177(144)296)375-393(316,412)332-37-99-79(14-121(351-99)272-56-225-136-151(202)217-52-221-155(136)272)370-384(307,403)326-32-94-73(287)8-115(346-94)271-55-224-135-150(201)216-51-220-154(135)271/h4-7,28-30,51-69,73-112,115-134,286-287H,8-27,31-50H2,1-3H3,(H,307,403)(H,308,404)(H,309,405)(H,310,406)(H,311,407)(H,312,408)(H,313,409)(H,314,410)(H,315,411)(H,316,412)(H,317,413)(H,318,414)(H,319,415)(H,320,416)(H,321,417)(H,322,418)(H,323,419)(H,324,420)(H,325,421)(H2,199,239,302)(H2,200,240,303)(H2,201,216,220)(H2,202,217,221)(H2,203,218,222)(H2,204,219,223)(H,263,288,304)(H,264,289,305)(H,265,290,306)(H3,205,241,252,291)(H3,206,242,253,292)(H3,207,243,254,293)(H3,208,244,255,294)(H3,209,245,256,295)(H3,210,246,257,296)(H3,211,247,258,297)(H3,212,248,259,298)(H3,213,249,260,299)(H3,214,250,261,300)(H3,215,251,262,301)
InChIKey
WPULZIURHYHZAF-UHFFFAOYSA-N
Compound name
1-[4-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(6-aminopurin-9-yl)-3-[[5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

0
References

0
Patents

6603.6494 Da
Monoisotopic Mass

-10.2
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6604.6567 311.5
[M+Na]+ 6626.6386 311.5
[M-H]- 6602.6421 311.5
[M+NH4]+ 6621.6832 311.5
[M+K]+ 6642.6126 311.5
[M+H-H2O]+ 6586.6467 311.5
[M+HCOO]- 6648.6476 311.5
[M+CH3COO]- 6662.6633 311.5
[M+Na-2H]- 6624.6241 311.5
[M]+ 6603.6489 311.5
[M]- 6603.6499 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.