CID 16131959

Hiv-1 10-mer tar rna containing 2'-o-methyl and 2',4'-locked nucleotides: [5'-lna(c)-2'-ome(u)-lna(c)-2'-ome(c)-lna(c)-2'-ome(a)-lna(g)-2'-ome(g)-lna(c)-2'-ome(u)-l-homoserine-6-carboxyfluorescein]

Structural Information

Molecular Formula
C132H156N36O79P10
SMILES
CC1=CN(C(=O)N=C1N)C2C3C(C(O2)(CO3)CO)OP(=O)(O)OCC4C(C(C(O4)N5C=CC(=O)NC5=O)OC)OP(=O)(O)OCC67COC(C6OP(=O)(O)OCC8C(C(C(O8)N9C=CC(=NC9=O)N)OC)OP(=O)(O)OCC12COC(C1OP(=O)(O)OCC1C(C(C(O1)N1C=NC3=C(N=CN=C31)N)OC)OP(=O)(O)OCC13COC(C1OP(=O)(O)OCC1C(C(C(O1)N1C=NC4=C1N=C(NC4=O)N)OC)OP(=O)(O)OCC14COC(C1OP(=O)(O)OCC1C(C(C(O1)N1C=CC(=O)NC1=O)OC)OP(=O)(O)OCC[C@@H](C(=O)N)NC(=O)C1=CC5=C(C=C1)C(=O)OC51C5=C(C=C(C=C5)O)OC5=C1C=CC(=C5)O)C(O4)N1C=C(C(=NC1=O)N)C)C(O3)N1C=NC3=C1N=C(NC3=O)N)C(O2)N1C=C(C(=NC1=O)N)C)C(O7)N1C=C(C(=NC1=O)N)C
InChI
InChI=1S/C132H156N36O79P10/c1-50-27-162(123(182)151-95(50)134)112-85-90(127(36-169,232-112)37-211-85)243-249(188,189)217-32-66-77(82(208-7)109(229-66)161-22-18-71(173)150-122(161)181)240-255(200,201)223-43-128-38-212-86(113(233-128)163-28-51(2)96(135)152-124(163)183)91(128)245-251(192,193)219-33-65-76(81(207-6)107(227-65)159-20-16-69(133)148-120(159)179)239-254(198,199)222-42-129-39-213-88(115(234-129)165-30-53(4)98(137)154-126(165)185)93(129)246-252(194,195)220-34-67-78(83(209-8)110(230-67)166-47-144-72-99(138)142-46-143-101(72)166)241-257(204,205)225-45-131-41-215-89(116(236-131)168-49-146-74-103(168)156-119(141)158-106(74)177)94(131)247-253(196,197)221-35-68-79(84(210-9)111(231-68)167-48-145-73-102(167)155-118(140)157-105(73)176)242-256(202,203)224-44-130-40-214-87(114(235-130)164-29-52(3)97(136)153-125(164)184)92(130)244-250(190,191)218-31-64-75(80(206-5)108(228-64)160-21-17-70(172)149-121(160)180)238-248(186,187)216-23-19-61(100(139)174)147-104(175)54-10-13-57-60(24-54)132(237-117(57)178)58-14-11-55(170)25-62(58)226-63-26-56(171)12-15-59(63)132/h10-18,20-22,24-30,46-49,61,64-68,75-94,107-116,169-171H,19,23,31-45H2,1-9H3,(H2,139,174)(H,147,175)(H,186,187)(H,188,189)(H,190,191)(H,192,193)(H,194,195)(H,196,197)(H,198,199)(H,200,201)(H,202,203)(H,204,205)(H2,133,148,179)(H2,134,151,182)(H2,135,152,183)(H2,136,153,184)(H2,137,154,185)(H2,138,142,143)(H,149,172,180)(H,150,173,181)(H3,140,155,157,176)(H3,141,156,158,177)/t61-,64?,65?,66?,67?,68?,75?,76?,77?,78?,79?,80?,81?,82?,83?,84?,85?,86?,87?,88?,89?,90?,91?,92?,93?,94?,107?,108?,109?,110?,111?,112?,113?,114?,115?,116?,127?,128?,129?,130?,131?/m0/s1
InChIKey
CVHOATZQCPQTIB-WFQCRDSNSA-N
Compound name
[3-[[7-[[3-[[7-[[3-[[7-[[3-[[7-[[3-[[(3S)-4-amino-3-[(3',6'-dihydroxy-1-oxospiro[2-benzofuran-3,9'-xanthene]-5-carbonyl)amino]-4-oxobutoxy]-hydroxyphosphoryl]oxy-5-(2,4-dioxopyrimidin-1-yl)-4-methoxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-hydroxyphosphoryl]oxy-5-(2-amino-6-oxo-1H-purin-9-yl)-4-methoxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-(2-amino-6-oxo-1H-purin-9-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-4-methoxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)-4-methoxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-hydroxyphosphoryl]oxy-5-(2,4-dioxopyrimidin-1-yl)-4-methoxyoxolan-2-yl]methyl [3-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-1-(hydroxymethyl)-2,5-dioxabicyclo[2.2.1]heptan-7-yl] hydrogen phosphate
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

3818.6672 Da
Monoisotopic Mass

-25.5
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 3819.6745 308.8
[M+Na]+ 3841.6564 310.1
[M-H]- 3817.6599 309.3
[M+NH4]+ 3836.7010 309.3
[M+K]+ 3857.6304 309.1
[M+H-H2O]+ 3801.6645 308.2
[M+HCOO]- 3863.6654 309.2
[M+CH3COO]- 3877.6811 309.3
[M+Na-2H]- 3839.6419 311.1
[M]+ 3818.6667 309.5
[M]- 3818.6677 309.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.