CID 16131958

Hiv-1 10-mer tar rna containing 2'-o-methyl and 2',4'-locked nucleotides: [5'-lna(c)-2'-ome(u)-lna(c)-2'-ome(c)-lna(c)-2'-ome(a)-2'-ome(g)-2'-ome(g)-lna(c)-2'-ome(u)-l-homoserine-6-carboxyfluorescein]

Structural Information

Molecular Formula
C132H158N36O79P10
SMILES
CC1=CN(C(=O)N=C1N)C2C3C(C(O2)(CO3)CO)OP(=O)(O)OCC4C(C(C(O4)N5C=CC(=O)NC5=O)OC)OP(=O)(O)OCC67COC(C6OP(=O)(O)OCC8C(C(C(O8)N9C=CC(=NC9=O)N)OC)OP(=O)(O)OCC12COC(C1OP(=O)(O)OCC1C(C(C(O1)N1C=NC3=C(N=CN=C31)N)OC)OP(=O)(O)OCC1C(C(C(O1)N1C=NC3=C1N=C(NC3=O)N)OC)OP(=O)(O)OCC1C(C(C(O1)N1C=NC3=C1N=C(NC3=O)N)OC)OP(=O)(O)OCC13COC(C1OP(=O)(O)OCC1C(C(C(O1)N1C=CC(=O)NC1=O)OC)OP(=O)(O)OCC[C@@H](C(=O)N)NC(=O)C1=CC4=C(C=C1)C(=O)OC41C4=C(C=C(C=C4)O)OC4=C1C=CC(=C4)O)C(O3)N1C=C(C(=NC1=O)N)C)C(O2)N1C=C(C(=NC1=O)N)C)C(O7)N1C=C(C(=NC1=O)N)C
InChI
InChI=1S/C132H158N36O79P10/c1-50-28-162(124(182)151-96(50)134)114-88-92(128(38-169,233-114)39-212-88)244-251(192,193)219-35-66-78(84(208-7)110(229-66)161-23-19-72(173)150-123(161)181)242-256(202,203)224-44-129-40-213-89(115(234-129)163-29-51(2)97(135)152-125(163)183)93(129)246-253(196,197)221-36-65-77(83(207-6)108(227-65)159-21-17-70(133)148-121(159)179)241-255(200,201)223-43-130-41-214-91(117(235-130)165-31-53(4)99(137)154-127(165)185)95(130)247-254(198,199)222-37-69-79(85(209-8)111(230-69)166-47-144-73-100(138)142-46-143-102(73)166)239-249(188,189)217-32-67-80(86(210-9)112(231-67)167-48-145-74-103(167)155-119(140)157-106(74)176)240-250(190,191)218-33-68-81(87(211-10)113(232-68)168-49-146-75-104(168)156-120(141)158-107(75)177)243-257(204,205)225-45-131-42-215-90(116(236-131)164-30-52(3)98(136)153-126(164)184)94(131)245-252(194,195)220-34-64-76(82(206-5)109(228-64)160-22-18-71(172)149-122(160)180)238-248(186,187)216-24-20-61(101(139)174)147-105(175)54-11-14-57-60(25-54)132(237-118(57)178)58-15-12-55(170)26-62(58)226-63-27-56(171)13-16-59(63)132/h11-19,21-23,25-31,46-49,61,64-69,76-95,108-117,169-171H,20,24,32-45H2,1-10H3,(H2,139,174)(H,147,175)(H,186,187)(H,188,189)(H,190,191)(H,192,193)(H,194,195)(H,196,197)(H,198,199)(H,200,201)(H,202,203)(H,204,205)(H2,133,148,179)(H2,134,151,182)(H2,135,152,183)(H2,136,153,184)(H2,137,154,185)(H2,138,142,143)(H,149,172,180)(H,150,173,181)(H3,140,155,157,176)(H3,141,156,158,177)/t61-,64?,65?,66?,67?,68?,69?,76?,77?,78?,79?,80?,81?,82?,83?,84?,85?,86?,87?,88?,89?,90?,91?,92?,93?,94?,95?,108?,109?,110?,111?,112?,113?,114?,115?,116?,117?,128?,129?,130?,131?/m0/s1
InChIKey
ORHRFMNCOKALSJ-GAAAPEHVSA-N
Compound name
[3-[[7-[[3-[[7-[[3-[[3-[[3-[[7-[[3-[[(3S)-4-amino-3-[(3',6'-dihydroxy-1-oxospiro[2-benzofuran-3,9'-xanthene]-5-carbonyl)amino]-4-oxobutoxy]-hydroxyphosphoryl]oxy-5-(2,4-dioxopyrimidin-1-yl)-4-methoxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-hydroxyphosphoryl]oxy-5-(2-amino-6-oxo-1H-purin-9-yl)-4-methoxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(2-amino-6-oxo-1H-purin-9-yl)-4-methoxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)-4-methoxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)-4-methoxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-3-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methoxy-hydroxyphosphoryl]oxy-5-(2,4-dioxopyrimidin-1-yl)-4-methoxyoxolan-2-yl]methyl [3-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-1-(hydroxymethyl)-2,5-dioxabicyclo[2.2.1]heptan-7-yl] hydrogen phosphate
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

3820.6829 Da
Monoisotopic Mass

-25.1
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 3821.6902 309.0
[M+Na]+ 3843.6721 310.6
[M-H]- 3819.6756 309.6
[M+NH4]+ 3838.7167 309.5
[M+K]+ 3859.6461 309.4
[M+H-H2O]+ 3803.6802 308.3
[M+HCOO]- 3865.6811 309.5
[M+CH3COO]- 3879.6968 309.5
[M+Na-2H]- 3841.6576 311.7
[M]+ 3820.6824 309.8
[M]- 3820.6834 309.8
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.