CID 16131587

5'-dgtgcmtcmatggtgcmacmggtcmt-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C200H257N72O103P19S19
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3COP(=S)(O)OC4CC(OC4COP(=S)(O)OC5CC(OC5COP(=O)(OC6CC(OC6COP(=S)(O)OC7CC(OC7COP(=S)(O)OC8CC(OC8COP(=S)(O)OC9CC(OC9COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1CO)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=NC1=O)N)C)N1C=C(C(=O)NC1=O)C)N1C=C(C(=NC1=O)N)C)N1C=NC2=C(N=CN=C21)N)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=NC1=O)N)C)N1C=NC2=C(N=CN=C21)N)N1C=C(C(=NC1=O)N)C)N1C=NC2=C1N=C(NC2=O)N)S)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)N1C=C(C(=NC1=O)N)C)O
InChI
InChI=1S/C200H257N72O103P19S19/c1-74-32-253(190(288)228-154(74)201)126-14-87(358-376(299,395)318-44-106-85(274)12-125(338-106)258-37-79(6)170(275)247-195(258)293)107(339-126)46-320-379(302,398)364-94-21-133(261-40-82(9)173(278)250-198(261)296)347-115(94)53-327-391(314,410)372-101-28-141(269-70-224-150-166(269)236-186(211)243-179(150)284)355-123(101)61-335-393(316,412)374-103-30-143(271-72-226-152-168(271)238-188(213)245-181(152)286)353-121(103)57-331-383(306,402)362-91-18-130(257-36-78(5)158(205)232-194(257)292)341-109(91)48-323-387(310,406)368-97-24-136(264-65-219-145-159(206)215-63-217-161(145)264)349-117(97)55-330-382(305,401)361-90-17-129(256-35-77(4)157(204)231-193(256)291)343-111(90)50-325-390(313,409)371-100-27-140(268-69-223-149-165(268)235-185(210)242-178(149)283)352-120(100)59-333-385(308,404)367-96-23-135(263-42-84(11)175(280)252-200(263)298)348-116(96)54-328-392(315,411)373-102-29-142(270-71-225-151-167(270)237-187(212)244-180(151)285)356-124(102)62-336-394(317,413)375-104-31-144(272-73-227-153-169(272)239-189(214)246-182(153)287)354-122(104)60-334-386(309,405)366-95-22-134(262-41-83(10)174(279)251-199(262)297)346-114(95)52-326-388(311,407)369-98-25-137(265-66-220-146-160(207)216-64-218-162(146)265)350-118(98)56-329-381(304,400)360-89-16-128(255-34-76(3)156(203)230-192(255)290)340-108(89)47-321-380(303,399)363-93-20-132(260-39-81(8)172(277)249-197(260)295)345-113(93)51-322-378(301,397)359-88-15-127(254-33-75(2)155(202)229-191(254)289)342-110(88)49-324-389(312,408)370-99-26-139(267-68-222-148-164(267)234-184(209)241-177(148)282)351-119(99)58-332-384(307,403)365-92-19-131(259-38-80(7)171(276)248-196(259)294)344-112(92)45-319-377(300,396)357-86-13-138(337-105(86)43-273)266-67-221-147-163(266)233-183(208)240-176(147)281/h32-42,63-73,85-144,273-274H,12-31,43-62H2,1-11H3,(H,299,395)(H,300,396)(H,301,397)(H,302,398)(H,303,399)(H,304,400)(H,305,401)(H,306,402)(H,307,403)(H,308,404)(H,309,405)(H,310,406)(H,311,407)(H,312,408)(H,313,409)(H,314,410)(H,315,411)(H,316,412)(H,317,413)(H2,201,228,288)(H2,202,229,289)(H2,203,230,290)(H2,204,231,291)(H2,205,232,292)(H2,206,215,217)(H2,207,216,218)(H,247,275,293)(H,248,276,294)(H,249,277,295)(H,250,278,296)(H,251,279,297)(H,252,280,298)(H3,208,233,240,281)(H3,209,234,241,282)(H3,210,235,242,283)(H3,211,236,243,284)(H3,212,237,244,285)(H3,213,238,245,286)(H3,214,239,246,287)
InChIKey
GHSDIAMGUUDZLY-UHFFFAOYSA-N
Compound name
1-[5-[[[5-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2-[[[2-[[[2-[[[2-[[[5-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2-[[[2-[[[5-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[5-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2-[[[2-[[[5-(4-amino-5-methyl-2-oxopyrimidin-1-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(2-amino-6-oxo-1H-purin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(2-amino-6-oxo-1H-purin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(2-amino-6-oxo-1H-purin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(2-amino-6-oxo-1H-purin-9-yl)oxolan-3-yl]oxy-sulfanylphosphoryl]oxymethyl]-5-(2-amino-6-oxo-1H-purin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

6510.679 Da
Monoisotopic Mass

-7.2
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6511.6863 311.5
[M+Na]+ 6533.6682 311.5
[M-H]- 6509.6717 311.5
[M+NH4]+ 6528.7128 311.5
[M+K]+ 6549.6422 311.5
[M+H-H2O]+ 6493.6763 311.5
[M+HCOO]- 6555.6772 311.5
[M+CH3COO]- 6569.6929 311.5
[M+Na-2H]- 6531.6537 311.5
[M]+ 6510.6785 311.5
[M]- 6510.6795 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.