CID 16131585

5'-dctcccgggagggggggtcct-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C194H245N79O103P20S20
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3COP(=S)(O)OC4CC(OC4COP(=S)(O)OC5CC(OC5COP(=S)(O)OC6CC(OC6COP(=S)(O)OC7CC(OC7COP(=S)(O)OC8CC(OC8COP(=O)(OC9CC(OC9COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)O)N1C=CC(=NC1=O)N)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C(N=CN=C21)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)S)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)O
InChI
InChI=1S/C194H245N79O103P20S20/c1-71-36-260(192(294)251-163(71)275)120-16-74(274)94(338-120)39-319-378(299,398)359-76-18-122(255-11-5-115(196)226-187(255)289)340-96(76)41-320-380(301,400)361-78-20-124(257-13-7-117(198)228-189(257)291)343-99(78)44-324-385(306,405)365-82-24-128(262-38-73(3)165(277)253-194(262)296)346-102(82)47-326-386(307,406)367-84-26-130(264-61-215-141-153(264)231-176(202)241-166(141)278)350-106(84)51-330-390(311,410)371-88-30-134(268-65-219-145-157(268)235-180(206)245-170(145)282)354-110(88)55-334-393(314,413)374-91-33-137(271-68-222-148-160(271)238-183(209)248-173(148)285)356-112(91)57-336-395(316,415)376-93-35-139(273-70-224-150-162(273)240-185(211)250-175(150)287)357-113(93)58-337-396(317,416)375-92-34-138(272-69-223-149-161(272)239-184(210)249-174(149)286)355-111(92)56-335-394(315,414)373-90-32-136(270-67-221-147-159(270)237-182(208)247-172(147)284)353-109(90)54-333-391(312,411)370-87-29-133(267-64-218-144-156(267)234-179(205)244-169(144)281)349-105(87)50-329-387(308,407)366-83-25-129(263-60-214-140-151(201)212-59-213-152(140)263)347-103(83)48-327-388(309,408)368-86-28-132(266-63-217-143-155(266)233-178(204)243-168(143)280)351-107(86)52-331-392(313,412)372-89-31-135(269-66-220-146-158(269)236-181(207)246-171(146)283)352-108(89)53-332-389(310,409)369-85-27-131(265-62-216-142-154(265)232-177(203)242-167(142)279)348-104(85)49-328-383(304,403)363-80-22-126(259-15-9-119(200)230-191(259)293)342-98(80)43-322-381(302,401)360-77-19-123(256-12-6-116(197)227-188(256)290)341-97(77)42-321-382(303,402)362-79-21-125(258-14-8-118(199)229-190(258)292)344-100(79)45-323-384(305,404)364-81-23-127(261-37-72(2)164(276)252-193(261)295)345-101(81)46-325-379(300,399)358-75-17-121(254-10-4-114(195)225-186(254)288)339-95(75)40-318-377(297,298)397/h4-15,36-38,59-70,74-113,120-139,274H,16-35,39-58H2,1-3H3,(H,299,398)(H,300,399)(H,301,400)(H,302,401)(H,303,402)(H,304,403)(H,305,404)(H,306,405)(H,307,406)(H,308,407)(H,309,408)(H,310,409)(H,311,410)(H,312,411)(H,313,412)(H,314,413)(H,315,414)(H,316,415)(H,317,416)(H2,195,225,288)(H2,196,226,289)(H2,197,227,290)(H2,198,228,291)(H2,199,229,292)(H2,200,230,293)(H2,201,212,213)(H,251,275,294)(H,252,276,295)(H,253,277,296)(H2,297,298,397)(H3,202,231,241,278)(H3,203,232,242,279)(H3,204,233,243,280)(H3,205,234,244,281)(H3,206,235,245,282)(H3,207,236,246,283)(H3,208,237,247,284)(H3,209,238,248,285)(H3,210,239,249,286)(H3,211,240,250,287)
InChIKey
BTFSDMDRFCOCQA-UHFFFAOYSA-N
Compound name
1-[5-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-(dihydroxyphosphinothioyloxymethyl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-sulfanylphosphoryl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

6587.5527 Da
Monoisotopic Mass

-11.6
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6588.5600 311.5
[M+Na]+ 6610.5419 311.5
[M-H]- 6586.5454 311.5
[M+NH4]+ 6605.5865 311.5
[M+K]+ 6626.5159 311.5
[M+H-H2O]+ 6570.5500 311.5
[M+HCOO]- 6632.5509 311.5
[M+CH3COO]- 6646.5666 311.5
[M+Na-2H]- 6608.5274 311.5
[M]+ 6587.5522 311.5
[M]- 6587.5532 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.