CID 16131582

5'-dcaccggttccgcagaccactatggctct-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C269H343N100O140P27S27
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3COP(=S)(O)OC4CC(OC4COP(=S)(O)OC5CC(OC5COP(=S)(O)OC6CC(OC6COP(=S)(O)OC7CC(OC7COP(=S)(O)OC8CC(OC8COP(=S)(O)OC9CC(OC9COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=O)(OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1CO)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C1N=C(NC2=O)N)S)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C(N=CN=C21)N)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=CC(=NC1=O)N)N1C=C(C(=O)NC1=O)C)N1C=NC2=C(N=CN=C21)N)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=CC(=NC1=O)N)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)O
InChI
InChI=1S/C269H343N100O140P27S27/c1-107-57-353(264(395)336-235(107)372)180-29-113(371)142(456-180)64-428-510(401,537)484-115-31-182(343-19-8-170(271)314-254(343)385)457-143(115)65-433-521(412,548)494-125-41-192(354-58-108(2)236(373)337-265(354)396)467-153(125)75-440-515(406,542)489-120-36-187(348-24-13-175(276)319-259(348)390)465-151(120)73-438-530(421,557)505-136-52-203(365-102-308-214-230(365)325-248(287)331-242(214)379)481-167(136)89-453-536(427,563)509-139-55-206(368-105-311-217-233(368)328-251(290)334-245(217)382)479-165(139)87-451-525(416,552)498-129-45-196(358-62-112(6)240(377)341-269(358)400)470-156(129)78-443-531(422,558)502-133-49-200(362-99-305-211-222(284)295-94-300-227(211)362)475-161(133)83-447-524(415,551)497-128-44-195(357-61-111(5)239(376)340-268(357)399)468-154(128)76-441-516(407,543)488-119-35-186(347-23-12-174(275)318-258(347)389)464-150(119)72-437-527(418,554)500-131-47-198(360-97-303-209-220(282)293-92-298-225(209)360)473-159(131)81-445-517(408,544)490-121-37-188(349-25-14-176(277)320-260(349)391)458-144(121)66-430-513(404,540)487-118-34-185(346-22-11-173(274)317-257(346)388)463-149(118)71-436-528(419,555)501-132-48-199(361-98-304-210-221(283)294-93-299-226(210)361)476-162(132)84-448-534(425,561)507-140-56-207(369-106-312-218-234(369)329-252(291)335-246(218)383)480-166(140)88-452-533(424,560)503-134-50-201(363-100-306-212-223(285)296-95-301-228(212)363)474-160(134)82-446-518(409,545)491-124-40-191(352-28-17-179(280)323-263(352)394)466-152(124)74-439-529(420,556)504-135-51-202(364-101-307-213-229(364)324-247(286)330-241(213)378)477-163(135)85-449-519(410,546)492-122-38-189(350-26-15-177(278)321-261(350)392)459-145(122)67-431-512(403,539)485-116-32-183(344-20-9-171(272)315-255(344)386)461-147(116)69-434-522(413,549)495-126-42-193(355-59-109(3)237(374)338-266(355)397)469-155(126)77-442-523(414,550)496-127-43-194(356-60-110(4)238(375)339-267(356)398)471-157(127)79-444-532(423,559)506-137-53-204(366-103-309-215-231(366)326-249(288)332-243(215)380)482-168(137)90-454-535(426,562)508-138-54-205(367-104-310-216-232(367)327-250(289)333-244(216)381)478-164(138)86-450-520(411,547)493-123-39-190(351-27-16-178(279)322-262(351)393)460-146(123)68-432-514(405,541)486-117-33-184(345-21-10-172(273)316-256(345)387)462-148(117)70-435-526(417,553)499-130-46-197(359-96-302-208-219(281)292-91-297-224(208)359)472-158(130)80-429-511(402,538)483-114-30-181(455-141(114)63-370)342-18-7-169(270)313-253(342)384/h7-28,57-62,91-106,113-168,180-207,370-371H,29-56,63-90H2,1-6H3,(H,401,537)(H,402,538)(H,403,539)(H,404,540)(H,405,541)(H,406,542)(H,407,543)(H,408,544)(H,409,545)(H,410,546)(H,411,547)(H,412,548)(H,413,549)(H,414,550)(H,415,551)(H,416,552)(H,417,553)(H,418,554)(H,419,555)(H,420,556)(H,421,557)(H,422,558)(H,423,559)(H,424,560)(H,425,561)(H,426,562)(H,427,563)(H2,270,313,384)(H2,271,314,385)(H2,272,315,386)(H2,273,316,387)(H2,274,317,388)(H2,275,318,389)(H2,276,319,390)(H2,277,320,391)(H2,278,321,392)(H2,279,322,393)(H2,280,323,394)(H2,281,292,297)(H2,282,293,298)(H2,283,294,299)(H2,284,295,300)(H2,285,296,301)(H,336,372,395)(H,337,373,396)(H,338,374,397)(H,339,375,398)(H,340,376,399)(H,341,377,400)(H3,286,324,330,378)(H3,287,325,331,379)(H3,288,326,332,380)(H3,289,327,333,381)(H3,290,328,334,382)(H3,291,329,335,383)
InChIKey
VLTWCVLKJPMHGD-UHFFFAOYSA-N
Compound name
1-[5-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-sulfanylphosphoryl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

8912.817 Da
Monoisotopic Mass

-11.5
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 8913.8243 311.5
[M+Na]+ 8935.8062 311.5
[M-H]- 8911.8097 311.5
[M+NH4]+ 8930.8508 311.5
[M+K]+ 8951.7802 311.5
[M+H-H2O]+ 8895.8143 311.5
[M+HCOO]- 8957.8152 311.5
[M+CH3COO]- 8971.8309 311.5
[M+Na-2H]- 8933.7917 311.5
[M]+ 8912.8165 311.5
[M]- 8912.8175 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.