CID 16131579

5'-dtcatgagtctggttgtcgatcgtattg-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C266H336N94O141P26S26
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)OP(=S)(O)OCC3C(CC(O3)N4C=CC(=NC4=O)N)OP(=S)(O)OCC5C(CC(O5)N6C=NC7=C(N=CN=C76)N)OP(=S)(O)OCC8C(CC(O8)N9C=C(C(=O)NC9=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)O)S
InChI
InChI=1S/C266H336N94O141P26S26/c1-101-47-338(256(386)323-225(101)363)175-21-113(139(58-361)449-175)476-503(398,529)424-60-141-114(22-171(451-141)334-16-12-166(267)303-252(334)382)478-505(400,531)438-74-155-128(36-186(465-155)349-89-291-197-209(271)283-85-287-213(197)349)491-517(412,543)433-69-150-127(35-185(460-150)348-57-111(11)235(373)333-266(348)396)490-516(411,542)445-81-162-137(45-195(472-162)359-99-301-207-223(359)313-250(281)321-242(207)380)500-526(421,552)441-77-158-131(39-189(468-158)352-92-294-200-212(274)286-88-290-216(200)352)494-524(419,550)447-83-164-134(42-192(474-164)356-96-298-204-220(356)310-247(278)318-239(204)377)497-522(417,548)435-71-152-120(28-178(462-152)341-50-104(4)228(366)326-259(341)389)483-508(403,534)425-61-142-115(23-172(452-142)335-17-13-167(268)304-253(335)383)477-504(399,530)428-65-146-124(32-182(456-146)345-54-108(8)232(370)330-263(345)393)488-514(409,540)446-82-163-138(46-196(473-163)360-100-302-208-224(360)314-251(282)322-243(208)381)501-527(422,553)448-84-165-135(43-193(475-165)357-97-299-205-221(357)311-248(279)319-240(205)378)498-523(418,549)436-72-153-123(31-181(463-153)344-53-107(7)231(369)329-262(344)392)486-512(407,538)430-66-147-125(33-183(457-147)346-55-109(9)233(371)331-264(346)394)489-515(410,541)444-80-161-133(41-191(471-161)355-95-297-203-219(355)309-246(277)317-238(203)376)496-521(416,547)434-70-151-121(29-179(461-151)342-51-105(5)229(367)327-260(342)390)484-510(405,536)427-63-144-117(25-174(454-144)337-19-15-169(270)306-255(337)385)480-507(402,533)443-79-160-136(44-194(470-160)358-98-300-206-222(358)312-249(280)320-241(206)379)499-525(420,551)440-76-157-130(38-188(467-157)351-91-293-199-211(273)285-87-289-215(199)351)493-519(414,545)431-67-148-119(27-177(458-148)340-49-103(3)227(365)325-258(340)388)482-509(404,535)426-62-143-116(24-173(453-143)336-18-14-168(269)305-254(336)384)479-506(401,532)442-78-159-132(40-190(469-159)354-94-296-202-218(354)308-245(276)316-237(202)375)495-520(415,546)437-73-154-126(34-184(464-154)347-56-110(10)234(372)332-265(347)395)487-513(408,539)439-75-156-129(37-187(466-156)350-90-292-198-210(272)284-86-288-214(198)350)492-518(413,544)432-68-149-122(30-180(459-149)343-52-106(6)230(368)328-261(343)391)485-511(406,537)429-64-145-118(26-176(455-145)339-48-102(2)226(364)324-257(339)387)481-502(397,528)423-59-140-112(362)20-170(450-140)353-93-295-201-217(353)307-244(275)315-236(201)374/h12-19,47-57,85-100,112-165,170-196,361-362H,20-46,58-84H2,1-11H3,(H,397,528)(H,398,529)(H,399,530)(H,400,531)(H,401,532)(H,402,533)(H,403,534)(H,404,535)(H,405,536)(H,406,537)(H,407,538)(H,408,539)(H,409,540)(H,410,541)(H,411,542)(H,412,543)(H,413,544)(H,414,545)(H,415,546)(H,416,547)(H,417,548)(H,418,549)(H,419,550)(H,420,551)(H,421,552)(H,422,553)(H2,267,303,382)(H2,268,304,383)(H2,269,305,384)(H2,270,306,385)(H2,271,283,287)(H2,272,284,288)(H2,273,285,289)(H2,274,286,290)(H,323,363,386)(H,324,364,387)(H,325,365,388)(H,326,366,389)(H,327,367,390)(H,328,368,391)(H,329,369,392)(H,330,370,393)(H,331,371,394)(H,332,372,395)(H,333,373,396)(H3,275,307,315,374)(H3,276,308,316,375)(H3,277,309,317,376)(H3,278,310,318,377)(H3,279,311,319,378)(H3,280,312,320,379)(H3,281,313,321,380)(H3,282,314,322,381)
InChIKey
QUZRFLNDXUKFHS-UHFFFAOYSA-N
Compound name
1-[4-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-sulfanylphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

8738.793 Da
Monoisotopic Mass

-8.3
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 8739.8003 311.5
[M+Na]+ 8761.7822 311.5
[M-H]- 8737.7857 311.5
[M+NH4]+ 8756.8268 311.5
[M+K]+ 8777.7562 311.5
[M+H-H2O]+ 8721.7903 311.5
[M+HCOO]- 8783.7912 311.5
[M+CH3COO]- 8797.8069 311.5
[M+Na-2H]- 8759.7677 311.5
[M]+ 8738.7925 311.5
[M]- 8738.7935 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.