CID 16131559

5'-dttcgtcttacctttgctt-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C175H227N50O98P17S17
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3COP(=S)(O)OC4CC(OC4COP(=O)(OC5CC(OC5COP(=S)(O)OC6CC(OC6COP(=S)(O)OC7CC(OC7COP(=S)(O)OC8CC(OC8COP(=S)(O)OC9CC(OC9COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1CO)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=NC2=C(N=CN=C21)N)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)S)N1C=CC(=NC1=O)N)N1C=C(C(=O)NC1=O)C)O
InChI
InChI=1S/C175H227N50O98P17S17/c1-71-39-213(166(245)198-147(71)228)122-21-81(227)100(290-122)50-272-324(255,341)313-88-28-129(215-41-73(3)149(230)200-168(215)247)297-107(88)57-279-327(258,344)311-86-26-126(211-19-14-120(179)192-164(211)243)295-105(86)55-278-339(270,356)322-97-37-138(224-69-187-141-145(224)194-159(182)196-157(141)238)306-116(97)66-288-337(268,354)320-95-35-136(222-48-80(10)156(237)207-175(222)254)302-112(95)62-284-335(266,352)318-93-33-134(220-46-78(8)154(235)205-173(220)252)300-110(93)60-282-333(264,350)316-91-31-132(218-44-76(6)152(233)203-171(218)250)298-108(91)58-280-328(259,345)309-84-24-124(209-17-12-118(177)190-162(209)241)291-101(84)51-274-326(257,343)308-83-23-123(208-16-11-117(176)189-161(208)240)294-104(83)54-277-338(269,355)321-96-36-137(223-68-186-140-143(181)184-67-185-144(140)223)304-114(96)64-286-336(267,353)319-94-34-135(221-47-79(9)155(236)206-174(221)253)301-111(94)61-283-334(265,351)317-92-32-133(219-45-77(7)153(234)204-172(219)251)299-109(92)59-281-329(260,346)310-85-25-125(210-18-13-119(178)191-163(210)242)292-102(85)52-276-332(263,349)315-90-30-131(217-43-75(5)151(232)202-170(217)249)303-113(90)63-285-340(271,357)323-98-38-139(225-70-188-142-146(225)195-160(183)197-158(142)239)305-115(98)65-287-330(261,347)312-87-27-127(212-20-15-121(180)193-165(212)244)293-103(87)53-275-331(262,348)314-89-29-130(216-42-74(4)150(231)201-169(216)248)296-106(89)56-273-325(256,342)307-82-22-128(289-99(82)49-226)214-40-72(2)148(229)199-167(214)246/h11-20,39-48,67-70,81-116,122-139,226-227H,21-38,49-66H2,1-10H3,(H,255,341)(H,256,342)(H,257,343)(H,258,344)(H,259,345)(H,260,346)(H,261,347)(H,262,348)(H,263,349)(H,264,350)(H,265,351)(H,266,352)(H,267,353)(H,268,354)(H,269,355)(H,270,356)(H,271,357)(H2,176,189,240)(H2,177,190,241)(H2,178,191,242)(H2,179,192,243)(H2,180,193,244)(H2,181,184,185)(H,198,228,245)(H,199,229,246)(H,200,230,247)(H,201,231,248)(H,202,232,249)(H,203,233,250)(H,204,234,251)(H,205,235,252)(H,206,236,253)(H,207,237,254)(H3,182,194,196,238)(H3,183,195,197,239)
InChIKey
YPCJEANTHBWVRY-UHFFFAOYSA-N
Compound name
1-[5-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[hydroxy-[2-[[hydroxy-[2-(hydroxymethyl)-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-sulfanylphosphoryl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

5666.5107 Da
Monoisotopic Mass

-5.3
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 5667.5180 311.6
[M+Na]+ 5689.4999 311.6
[M-H]- 5665.5034 311.6
[M+NH4]+ 5684.5445 311.6
[M+K]+ 5705.4739 311.6
[M+H-H2O]+ 5649.5080 311.5
[M+HCOO]- 5711.5089 311.6
[M+CH3COO]- 5725.5246 311.6
[M+Na-2H]- 5687.4854 311.6
[M]+ 5666.5102 311.6
[M]- 5666.5112 311.6
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.