CID 16131558

5'-dttggtgttacgtttggtt-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C179H227N58O98P17S17
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3COP(=S)(O)OC4CC(OC4COP(=O)(OC5CC(OC5COP(=S)(O)OC6CC(OC6COP(=S)(O)OC7CC(OC7COP(=S)(O)OC8CC(OC8COP(=S)(O)OC9CC(OC9COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1COP(=S)(O)OC1CC(OC1CO)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=NC2=C(N=CN=C21)N)N1C=CC(=NC1=O)N)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=NC2=C1N=C(NC2=O)N)S)N1C=NC2=C1N=C(NC2=O)N)N1C=C(C(=O)NC1=O)C)O
InChI
InChI=1S/C179H227N58O98P17S17/c1-67-31-221(170(257)210-147(67)240)114-13-77(239)96(302-114)42-284-336(267,353)321-80-16-117(223-33-69(3)149(242)212-172(223)259)305-99(80)45-290-347(278,364)332-91-27-128(234-63-193-135-143(234)200-165(184)206-159(135)252)317-111(91)57-299-351(282,368)335-94-30-131(237-66-196-138-146(237)203-168(187)209-162(138)255)316-110(94)56-298-344(275,361)327-86-22-123(229-39-75(9)155(248)218-178(229)265)308-102(86)48-289-339(270,356)322-82-18-119(225-35-71(5)151(244)214-174(225)261)306-100(82)46-287-340(271,357)323-83-19-120(226-36-72(6)152(245)215-175(226)262)309-103(83)49-291-348(279,365)330-89-25-126(232-61-191-133-141(232)198-163(182)204-157(133)250)313-107(89)53-295-338(269,355)320-79-15-115(220-12-11-113(180)197-169(220)256)303-97(79)43-286-346(277,363)329-88-24-125(231-60-190-132-139(181)188-59-189-140(132)231)312-106(88)52-294-342(273,359)326-85-21-122(228-38-74(8)154(247)217-177(228)264)307-101(85)47-288-341(272,358)324-84-20-121(227-37-73(7)153(246)216-176(227)263)310-104(84)50-292-349(280,366)331-90-26-127(233-62-192-134-142(233)199-164(183)205-158(134)251)314-108(90)54-297-345(276,362)328-87-23-124(230-40-76(10)156(249)219-179(230)266)311-105(87)51-293-350(281,367)333-92-28-129(235-64-194-136-144(235)201-166(185)207-160(136)253)318-112(92)58-300-352(283,369)334-93-29-130(236-65-195-137-145(236)202-167(186)208-161(137)254)315-109(93)55-296-343(274,360)325-81-17-118(224-34-70(4)150(243)213-173(224)260)304-98(81)44-285-337(268,354)319-78-14-116(301-95(78)41-238)222-32-68(2)148(241)211-171(222)258/h11-12,31-40,59-66,77-112,114-131,238-239H,13-30,41-58H2,1-10H3,(H,267,353)(H,268,354)(H,269,355)(H,270,356)(H,271,357)(H,272,358)(H,273,359)(H,274,360)(H,275,361)(H,276,362)(H,277,363)(H,278,364)(H,279,365)(H,280,366)(H,281,367)(H,282,368)(H,283,369)(H2,180,197,256)(H2,181,188,189)(H,210,240,257)(H,211,241,258)(H,212,242,259)(H,213,243,260)(H,214,244,261)(H,215,245,262)(H,216,246,263)(H,217,247,264)(H,218,248,265)(H,219,249,266)(H3,182,198,204,250)(H3,183,199,205,251)(H3,184,200,206,252)(H3,185,201,207,253)(H3,186,202,208,254)(H3,187,203,209,255)
InChIKey
XBPDQKNAWJQAKZ-UHFFFAOYSA-N
Compound name
1-[5-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[2-[[[2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[hydroxy-[2-[[hydroxy-[2-(hydroxymethyl)-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-sulfanylphosphoryl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-4-hydroxyoxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

5826.535 Da
Monoisotopic Mass

-5.7
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 5827.5423 311.5
[M+Na]+ 5849.5242 311.5
[M-H]- 5825.5277 311.5
[M+NH4]+ 5844.5688 311.5
[M+K]+ 5865.4982 311.5
[M+H-H2O]+ 5809.5323 311.5
[M+HCOO]- 5871.5332 311.5
[M+CH3COO]- 5885.5489 311.5
[M+Na-2H]- 5847.5097 311.5
[M]+ 5826.5345 311.5
[M]- 5826.5355 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.