CID 16131556

5'-dattcctcctcatcg-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C134H174N43O72P13S13
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3COP(=S)(O)OC4CC(OC4COP(=S)(O)OC5CC(OC5COP(=S)(O)OC6CC(OC6COP(=O)(OC7CC(OC7CO)N8C=NC9=C(N=CN=C98)N)S)N1C=C(C(=O)NC1=O)C)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)O
InChI
InChI=1S/C134H174N43O72P13S13/c1-56-32-170(130(192)159-117(56)180)102-26-69(83(231-102)45-211-251(198,264)237-62-19-107(223-75(62)37-178)175-53-148-109-112(141)144-51-146-114(109)175)248-261(208,274)220-48-86-72(29-105(234-86)173-35-59(4)120(183)162-133(173)195)246-260(207,273)216-43-81-65(22-98(229-81)166-14-8-91(137)153-126(166)188)240-253(200,266)213-41-79-66(23-99(227-79)167-15-9-92(138)154-127(167)189)241-254(201,267)218-46-84-70(27-103(232-84)171-33-57(2)118(181)160-131(171)193)244-258(205,271)215-42-80-64(21-97(228-80)165-13-7-90(136)152-125(165)187)239-252(199,265)212-40-78-67(24-100(226-78)168-16-10-93(139)155-128(168)190)242-255(202,268)219-47-85-71(28-104(233-85)172-34-58(3)119(182)161-132(172)194)245-259(206,272)217-44-82-68(25-101(230-82)169-17-11-94(140)156-129(169)191)243-256(203,269)222-50-88-74(31-108(236-88)176-54-149-110-113(142)145-52-147-115(110)176)249-262(209,275)221-49-87-73(30-106(235-87)174-36-60(5)121(184)163-134(174)196)247-257(204,270)214-39-77-63(20-96(225-77)164-12-6-89(135)151-124(164)186)238-250(197,263)210-38-76-61(179)18-95(224-76)177-55-150-111-116(177)157-123(143)158-122(111)185/h6-17,32-36,51-55,61-88,95-108,178-179H,18-31,37-50H2,1-5H3,(H,197,263)(H,198,264)(H,199,265)(H,200,266)(H,201,267)(H,202,268)(H,203,269)(H,204,270)(H,205,271)(H,206,272)(H,207,273)(H,208,274)(H,209,275)(H2,135,151,186)(H2,136,152,187)(H2,137,153,188)(H2,138,154,189)(H2,139,155,190)(H2,140,156,191)(H2,141,144,146)(H2,142,145,147)(H,159,180,192)(H,160,181,193)(H,161,182,194)(H,162,183,195)(H,163,184,196)(H3,143,157,158,185)
InChIKey
ANNOKAXXHBUUPB-UHFFFAOYSA-N
Compound name
1-[4-[[3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[2-[[[2-[[[5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy-sulfanylphosphoryl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

4355.4233 Da
Monoisotopic Mass

-5.7
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 4356.4306 310.7
[M+Na]+ 4378.4125 311.1
[M-H]- 4354.4160 310.9
[M+NH4]+ 4373.4571 310.9
[M+K]+ 4394.3865 310.9
[M+H-H2O]+ 4338.4206 310.7
[M+HCOO]- 4400.4215 310.9
[M+CH3COO]- 4414.4372 310.9
[M+Na-2H]- 4376.3980 311.4
[M]+ 4355.4228 311.1
[M]- 4355.4238 311.1
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.