CID 16131555

5'-dattcgtgctcatgg-3', phosphorothioate oligodeoxynucleotide

Structural Information

Molecular Formula
C137H174N49O72P13S13
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3CO)N4C=NC5=C(N=CN=C54)N)OP(=S)(O)OCC6C(CC(O6)N7C=C(C(=O)NC7=O)C)OP(=S)(O)OCC8C(CC(O8)N9C=CC(=NC9=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=S)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)O)S
InChI
InChI=1S/C137H174N49O72P13S13/c1-53-26-176(133(201)168-117(53)189)93-17-63(77(237-93)36-220-260(207,273)246-59-13-98(232-72(59)31-187)181-47-151-103-109(141)147-45-149-111(103)181)252-266(213,279)225-38-79-65(19-95(239-79)178-28-55(3)119(191)170-135(178)203)251-265(212,278)222-34-75-62(16-92(235-75)175-11-8-88(140)159-132(175)200)249-263(210,276)229-43-84-71(25-102(244-84)186-52-156-108-116(186)163-129(146)167-125(108)197)258-271(218,284)227-40-81-67(21-97(241-81)180-30-57(5)121(193)172-137(180)205)254-268(215,281)231-44-85-70(24-101(245-85)185-51-155-107-115(185)162-128(145)166-124(107)196)257-269(216,282)223-35-76-60(14-90(236-76)173-9-6-86(138)157-130(173)198)247-261(208,274)224-37-78-64(18-94(238-78)177-27-54(2)118(190)169-134(177)202)250-264(211,277)221-33-74-61(15-91(234-74)174-10-7-87(139)158-131(174)199)248-262(209,275)228-41-82-68(22-99(242-82)182-48-152-104-110(142)148-46-150-112(104)182)256-270(217,283)226-39-80-66(20-96(240-80)179-29-56(4)120(192)171-136(179)204)253-267(214,280)230-42-83-69(23-100(243-83)184-50-154-106-114(184)161-127(144)165-123(106)195)255-259(206,272)219-32-73-58(188)12-89(233-73)183-49-153-105-113(183)160-126(143)164-122(105)194/h6-11,26-30,45-52,58-85,89-102,187-188H,12-25,31-44H2,1-5H3,(H,206,272)(H,207,273)(H,208,274)(H,209,275)(H,210,276)(H,211,277)(H,212,278)(H,213,279)(H,214,280)(H,215,281)(H,216,282)(H,217,283)(H,218,284)(H2,138,157,198)(H2,139,158,199)(H2,140,159,200)(H2,141,147,149)(H2,142,148,150)(H,168,189,201)(H,169,190,202)(H,170,191,203)(H,171,192,204)(H,172,193,205)(H3,143,160,164,194)(H3,144,161,165,195)(H3,145,162,166,196)(H3,146,163,167,197)
InChIKey
MJKDVEMXLZBLPD-UHFFFAOYSA-N
Compound name
1-[4-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-sulfanylphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-[[[5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

4475.442 Da
Monoisotopic Mass

-6.0
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 4476.4493 311.0
[M+Na]+ 4498.4312 311.2
[M-H]- 4474.4347 311.0
[M+NH4]+ 4493.4758 311.1
[M+K]+ 4514.4052 311.1
[M+H-H2O]+ 4458.4393 311.0
[M+HCOO]- 4520.4402 311.1
[M+CH3COO]- 4534.4559 311.1
[M+Na-2H]- 4496.4167 311.3
[M]+ 4475.4415 311.2
[M]- 4475.4425 311.2
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.