CID 16130383

(3-5)octadecylamide conjugated oligonucleotide(p-ttgaaacccgagaacatcat)

Structural Information

Molecular Formula
C213H283N79O116P20
SMILES
CCCCCCCCCCCCCCCCCCNP(=O)(O)OCC1C(CC(O1)N2C=C(C(=O)NC2=O)C)OP(=O)(O)OCC3C(CC(O3)N4C=C(C(=O)NC4=O)C)OP(=O)(O)OCC5C(CC(O5)N6C=NC7=C6N=C(NC7=O)N)OP(=O)(O)OCC8C(CC(O8)N9C=NC1=C(N=CN=C19)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)O
InChI
InChI=1S/C213H283N79O116P20/c1-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-27-257-409(310,311)350-58-121-106(39-151(376-121)279-54-97(3)196(295)270-211(279)307)395-416(324,325)357-64-127-108(41-153(377-127)281-56-99(5)198(297)272-213(281)309)397-418(328,329)368-75-138-118(51-163(388-138)291-94-255-174-193(291)264-203(228)267-200(174)299)407-427(346,347)364-71-134-115(48-160(384-134)288-91-252-171-182(225)236-83-244-190(171)288)404-424(340,341)363-70-133-113(46-158(383-133)286-89-250-169-180(223)234-81-242-188(169)286)402-422(336,337)361-68-131-110(43-155(381-131)283-86-247-166-177(220)231-78-239-185(166)283)399-419(330,331)355-62-125-102(35-147(374-125)274-29-23-141(215)259-206(274)302)391-412(316,317)352-59-122-101(34-146(371-122)273-28-22-140(214)258-205(273)301)390-411(314,315)353-60-123-103(36-148(372-123)275-30-24-142(216)260-207(275)303)394-415(322,323)367-74-137-117(50-162(387-137)290-93-254-173-192(290)263-202(227)266-199(173)298)406-426(344,345)366-73-136-116(49-161(386-136)289-92-253-172-183(226)237-84-245-191(172)289)405-425(342,343)369-76-139-119(52-164(389-139)292-95-256-175-194(292)265-204(229)268-201(175)300)408-428(348,349)365-72-135-114(47-159(385-135)287-90-251-170-181(224)235-82-243-189(170)287)403-423(338,339)362-69-132-111(44-156(382-132)284-87-248-167-178(221)232-79-240-186(167)284)400-420(332,333)356-63-126-105(38-150(375-126)277-32-26-144(218)262-209(277)305)393-414(320,321)360-67-130-112(45-157(380-130)285-88-249-168-179(222)233-80-241-187(168)285)401-421(334,335)358-65-128-107(40-152(378-128)280-55-98(4)197(296)271-212(280)308)396-417(326,327)354-61-124-104(37-149(373-124)276-31-25-143(217)261-208(276)304)392-413(318,319)359-66-129-109(42-154(379-129)282-85-246-165-176(219)230-77-238-184(165)282)398-410(312,313)351-57-120-100(293)33-145(370-120)278-53-96(2)195(294)269-210(278)306/h22-26,28-32,53-56,77-95,100-139,145-164,293H,6-21,27,33-52,57-76H2,1-5H3,(H,312,313)(H,314,315)(H,316,317)(H,318,319)(H,320,321)(H,322,323)(H,324,325)(H,326,327)(H,328,329)(H,330,331)(H,332,333)(H,334,335)(H,336,337)(H,338,339)(H,340,341)(H,342,343)(H,344,345)(H,346,347)(H,348,349)(H2,214,258,301)(H2,215,259,302)(H2,216,260,303)(H2,217,261,304)(H2,218,262,305)(H2,219,230,238)(H2,220,231,239)(H2,221,232,240)(H2,222,233,241)(H2,223,234,242)(H2,224,235,243)(H2,225,236,244)(H2,226,237,245)(H2,257,310,311)(H,269,294,306)(H,270,295,307)(H,271,296,308)(H,272,297,309)(H3,227,263,266,298)(H3,228,264,267,299)(H3,229,265,268,300)
InChIKey
JQBLWFHUBGWWDN-UHFFFAOYSA-N
Compound name
[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[3-[[3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[5-(6-aminopurin-9-yl)-3-[hydroxy-[[3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-N-octadecylphosphonamidic acid
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

6422.343 Da
Monoisotopic Mass

-29.7
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6423.3503 311.5
[M+Na]+ 6445.3322 311.5
[M-H]- 6421.3357 311.5
[M+NH4]+ 6440.3768 311.5
[M+K]+ 6461.3062 311.5
[M+H-H2O]+ 6405.3403 311.5
[M+HCOO]- 6467.3412 311.5
[M+CH3COO]- 6481.3569 311.5
[M+Na-2H]- 6443.3177 311.5
[M]+ 6422.3425 311.5
[M]- 6422.3435 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.