CID 16130377

Rm-20 oligonucleotide-cholesterol deriv.

Structural Information

Molecular Formula
C222H291N81O118P20
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OC3CC(OC3COP(=O)(O)OC4CC(OC4COP(=O)(O)OC5CC(OC5COP(=O)(O)OC6CC(OC6COP(=O)(O)OC7CC(OC7COP(=O)(O)OC8CC(OC8COP(=O)(O)OC9CC(OC9COP(=O)(O)OC1CC(OC1COP(=O)(O)OC1CC(OC1COP(=O)(O)OC1CC(OC1COP(=O)(O)OC1CC(OC1COP(=O)(O)OC1CC(OC1COP(=O)(NCC(=O)OC1CCC2(C3CCC4(C(C3CC=C2C1)CCC4C(C)CCCC(C)C)C)C)O)N1C=NC2=C1N=C(NC2=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=C(C(=O)NC1=O)C)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=NC2=C(N=CN=C21)N)N1C=NC2=C1N=C(NC2=O)N)N1C=CC(=NC1=O)N)N1C=NC2=C(N=CN=C21)N)N1C=NC2=C1N=C(NC2=O)N)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)O
InChI
InChI=1S/C222H291N81O118P20/c1-94(2)9-8-10-95(3)101-13-14-102-100-12-11-98-33-99(15-24-221(98,6)103(100)16-25-222(101,102)7)382-171(305)54-264-422(322,323)362-58-125-114(49-166(393-125)299-89-259-178-195(299)272-207(236)277-202(178)308)412-432(342,343)367-63-130-110(40-157(388-130)289-31-22-149(228)270-217(289)318)408-428(334,335)373-68-135-115(44-161(394-135)294-84-254-173-184(231)242-78-248-190(173)294)413-436(350,351)372-67-134-113(43-160(392-134)292-56-97(5)201(307)283-220(292)321)411-431(340,341)366-62-129-109(39-156(387-129)288-30-21-148(227)269-216(288)317)407-427(332,333)374-69-136-116(45-162(395-136)295-85-255-174-185(232)243-79-249-191(174)295)414-437(352,353)377-72-139-119(48-165(398-139)298-88-258-177-188(235)246-82-252-194(177)298)417-440(358,359)379-74-141-121(51-168(400-141)301-91-261-180-197(301)274-209(238)279-204(180)310)420-435(348,349)370-65-132-111(41-158(390-132)290-32-23-150(229)271-218(290)319)409-429(336,337)376-71-138-117(46-163(397-138)296-86-256-175-186(233)244-80-250-192(175)296)415-438(354,355)378-73-140-120(50-167(399-140)300-90-260-179-196(300)273-208(237)278-203(179)309)419-434(346,347)369-64-131-107(37-154(389-131)286-28-19-146(225)267-214(286)315)405-425(328,329)371-66-133-112(42-159(391-133)291-55-96(4)200(306)282-219(291)320)410-430(338,339)365-61-128-106(36-153(386-128)285-27-18-145(224)266-213(285)314)404-424(326,327)364-60-127-108(38-155(385-127)287-29-20-147(226)268-215(287)316)406-426(330,331)375-70-137-118(47-164(396-137)297-87-257-176-187(234)245-81-251-193(176)297)416-439(356,357)380-75-142-123(53-170(401-142)303-93-263-182-199(303)276-211(240)281-206(182)312)421-441(360,361)381-76-143-122(52-169(402-143)302-92-262-181-198(302)275-210(239)280-205(181)311)418-433(344,345)368-59-126-105(35-152(384-126)284-26-17-144(223)265-212(284)313)403-423(324,325)363-57-124-104(304)34-151(383-124)293-83-253-172-183(230)241-77-247-189(172)293/h11,17-23,26-32,55-56,77-95,99-143,151-170,304H,8-10,12-16,24-25,33-54,57-76H2,1-7H3,(H,324,325)(H,326,327)(H,328,329)(H,330,331)(H,332,333)(H,334,335)(H,336,337)(H,338,339)(H,340,341)(H,342,343)(H,344,345)(H,346,347)(H,348,349)(H,350,351)(H,352,353)(H,354,355)(H,356,357)(H,358,359)(H,360,361)(H2,223,265,313)(H2,224,266,314)(H2,225,267,315)(H2,226,268,316)(H2,227,269,317)(H2,228,270,318)(H2,229,271,319)(H2,230,241,247)(H2,231,242,248)(H2,232,243,249)(H2,233,244,250)(H2,234,245,251)(H2,235,246,252)(H2,264,322,323)(H,282,306,320)(H,283,307,321)(H3,236,272,277,308)(H3,237,273,278,309)(H3,238,274,279,310)(H3,239,275,280,311)(H3,240,276,281,312)
InChIKey
GQTWXSDNGMSQDL-UHFFFAOYSA-N
Compound name
[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-N-[2-[[10,13-dimethyl-17-(6-methylheptan-2-yl)-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-yl]oxy]-2-oxoethyl]phosphonamidic acid
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

6598.4014 Da
Monoisotopic Mass

-32.7
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6599.4087 311.5
[M+Na]+ 6621.3906 311.5
[M-H]- 6597.3941 311.5
[M+NH4]+ 6616.4352 311.5
[M+K]+ 6637.3646 311.5
[M+H-H2O]+ 6581.3987 311.5
[M+HCOO]- 6643.3996 311.5
[M+CH3COO]- 6657.4153 311.5
[M+Na-2H]- 6619.3761 311.5
[M]+ 6598.4009 311.5
[M]- 6598.4019 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.