CID 16130144

Mr-20 oligonucleotide-cholesterol deriv.

Structural Information

Molecular Formula
C224H295N73O126P20
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(NCC(=O)OC3CCC4(C5CCC6(C(C5CC=C4C3)CCC6C(C)CCCC(C)C)C)C)O)OP(=O)(O)OCC7C(CC(O7)N8C=NC9=C8N=C(NC9=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)O
InChI
InChI=1S/C224H295N73O126P20/c1-92(2)13-12-14-93(3)103-17-18-104-102-16-15-100-33-101(19-26-223(100,10)105(102)20-27-224(103,104)11)384-171(299)54-252-424(324,325)364-62-127-111(39-156(390-127)283-55-94(4)192(300)272-217(283)318)409-430(336,337)377-75-140-120(48-165(399-140)292-86-246-175-186(292)259-206(233)266-199(175)307)418-436(348,349)367-64-129-107(35-152(387-129)279-29-22-147(226)254-213(279)314)405-426(328,329)366-63-128-108(36-153(386-128)280-30-23-148(227)255-214(280)315)406-427(330,331)371-68-133-114(42-159(392-133)286-58-97(7)195(303)275-220(286)321)412-434(344,345)381-78-143-124(52-169(402-143)296-90-250-179-190(296)263-210(237)270-203(179)311)423-443(362,363)383-80-145-125(53-170(404-145)297-91-251-180-191(297)264-211(238)271-204(180)312)422-442(360,361)376-73-138-118(46-163(397-138)290-84-244-173-182(231)240-82-242-184(173)290)417-440(356,357)382-79-144-122(50-167(403-144)294-88-248-177-188(294)261-208(235)268-201(177)309)420-438(352,353)369-66-131-110(38-155(389-131)282-32-25-150(229)257-216(282)317)408-429(334,335)372-69-134-113(41-158(393-134)285-57-96(6)194(302)274-219(285)320)411-433(342,343)379-76-141-121(49-166(400-141)293-87-247-176-187(293)260-207(234)267-200(176)308)419-437(350,351)368-65-130-109(37-154(388-130)281-31-24-149(228)256-215(281)316)407-428(332,333)370-67-132-112(40-157(391-132)284-56-95(5)193(301)273-218(284)319)410-431(338,339)373-70-135-115(43-160(394-135)287-59-98(8)196(304)276-221(287)322)413-435(346,347)380-77-142-123(51-168(401-142)295-89-249-178-189(295)262-209(236)269-202(178)310)421-441(358,359)375-72-137-117(45-162(396-137)289-83-243-172-181(230)239-81-241-183(172)289)416-439(354,355)374-71-136-116(44-161(395-136)288-60-99(9)197(305)277-222(288)323)414-432(340,341)378-74-139-119(47-164(398-139)291-85-245-174-185(291)258-205(232)265-198(174)306)415-425(326,327)365-61-126-106(298)34-151(385-126)278-28-21-146(225)253-212(278)313/h15,21-25,28-32,55-60,81-93,101-145,151-170,298H,12-14,16-20,26-27,33-54,61-80H2,1-11H3,(H,326,327)(H,328,329)(H,330,331)(H,332,333)(H,334,335)(H,336,337)(H,338,339)(H,340,341)(H,342,343)(H,344,345)(H,346,347)(H,348,349)(H,350,351)(H,352,353)(H,354,355)(H,356,357)(H,358,359)(H,360,361)(H,362,363)(H2,225,253,313)(H2,226,254,314)(H2,227,255,315)(H2,228,256,316)(H2,229,257,317)(H2,230,239,241)(H2,231,240,242)(H2,252,324,325)(H,272,300,318)(H,273,301,319)(H,274,302,320)(H,275,303,321)(H,276,304,322)(H,277,305,323)(H3,232,258,265,306)(H3,233,259,266,307)(H3,234,260,267,308)(H3,235,261,268,309)(H3,236,262,269,310)(H3,237,263,270,311)(H3,238,264,271,312)
InChIKey
XSTAJQDYPJXJFC-UHFFFAOYSA-N
Compound name
[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-N-[2-[[10,13-dimethyl-17-(6-methylheptan-2-yl)-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-yl]oxy]-2-oxoethyl]phosphonamidic acid
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

6642.367 Da
Monoisotopic Mass

-33.0
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6643.3743 311.5
[M+Na]+ 6665.3562 311.5
[M-H]- 6641.3597 311.5
[M+NH4]+ 6660.4008 311.5
[M+K]+ 6681.3302 311.5
[M+H-H2O]+ 6625.3643 311.5
[M+HCOO]- 6687.3652 311.5
[M+CH3COO]- 6701.3809 311.5
[M+Na-2H]- 6663.3417 311.5
[M]+ 6642.3665 311.5
[M]- 6642.3675 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.