CID 16130143

Monopalmitoyl propylene diamine conjugated oligonucleotide(ptgcctggagctgcttgatgc)

Structural Information

Molecular Formula
C214H286N74O125P20
SMILES
CCCCCCCCCCCCCCCC(=O)NCCCNP(=O)(O)OCC1C(CC(O1)N2C=C(C(=O)NC2=O)C)OP(=O)(O)OCC3C(CC(O3)N4C=NC5=C4N=C(NC5=O)N)OP(=O)(O)OCC6C(CC(O6)N7C=CC(=NC7=O)N)OP(=O)(O)OCC8C(CC(O8)N9C=CC(=NC9=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)O
InChI
InChI=1S/C214H286N74O125P20/c1-8-9-10-11-12-13-14-15-16-17-18-19-20-22-143(290)229-28-21-29-243-414(315,316)355-62-119-103(40-149(380-119)274-55-92(2)184(291)263-209(274)309)399-420(327,328)368-75-132-112(49-158(389-132)283-86-237-167-178(283)250-198(223)257-191(167)298)408-426(339,340)358-64-121-99(36-145(377-121)270-31-24-139(216)245-205(270)305)395-416(319,320)357-63-120-100(37-146(376-120)271-32-25-140(217)246-206(271)306)396-417(321,322)362-68-125-106(43-152(382-125)277-58-95(5)187(294)266-212(277)312)402-424(335,336)372-78-135-116(53-162(392-135)287-90-241-171-182(287)254-202(227)261-195(171)302)413-433(353,354)374-80-137-117(54-163(394-137)288-91-242-172-183(288)255-203(228)262-196(172)303)412-432(351,352)367-73-130-110(47-156(387-130)281-84-235-165-174(221)231-82-233-176(165)281)407-430(347,348)373-79-136-114(51-160(393-136)285-88-239-169-180(285)252-200(225)259-193(169)300)410-428(343,344)360-66-123-102(39-148(379-123)273-34-27-142(219)248-208(273)308)398-419(325,326)363-69-126-105(42-151(383-126)276-57-94(4)186(293)265-211(276)311)401-423(333,334)370-76-133-113(50-159(390-133)284-87-238-168-179(284)251-199(224)258-192(168)299)409-427(341,342)359-65-122-101(38-147(378-122)272-33-26-141(218)247-207(272)307)397-418(323,324)361-67-124-104(41-150(381-124)275-56-93(3)185(292)264-210(275)310)400-421(329,330)364-70-127-107(44-153(384-127)278-59-96(6)188(295)267-213(278)313)403-425(337,338)371-77-134-115(52-161(391-134)286-89-240-170-181(286)253-201(226)260-194(170)301)411-431(349,350)366-72-129-109(46-155(386-129)280-83-234-164-173(220)230-81-232-175(164)280)406-429(345,346)365-71-128-108(45-154(385-128)279-60-97(7)189(296)268-214(279)314)404-422(331,332)369-74-131-111(48-157(388-131)282-85-236-166-177(282)249-197(222)256-190(166)297)405-415(317,318)356-61-118-98(289)35-144(375-118)269-30-23-138(215)244-204(269)304/h23-27,30-34,55-60,81-91,98-137,144-163,289H,8-22,28-29,35-54,61-80H2,1-7H3,(H,229,290)(H,317,318)(H,319,320)(H,321,322)(H,323,324)(H,325,326)(H,327,328)(H,329,330)(H,331,332)(H,333,334)(H,335,336)(H,337,338)(H,339,340)(H,341,342)(H,343,344)(H,345,346)(H,347,348)(H,349,350)(H,351,352)(H,353,354)(H2,215,244,304)(H2,216,245,305)(H2,217,246,306)(H2,218,247,307)(H2,219,248,308)(H2,220,230,232)(H2,221,231,233)(H2,243,315,316)(H,263,291,309)(H,264,292,310)(H,265,293,311)(H,266,294,312)(H,267,295,313)(H,268,296,314)(H3,222,249,256,297)(H3,223,250,257,298)(H3,224,251,258,299)(H3,225,252,259,300)(H3,226,253,260,301)(H3,227,254,261,302)(H3,228,255,262,303)
InChIKey
WLPURTWNPCCYHD-UHFFFAOYSA-N
Compound name
[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-N-[3-(hexadecanoylamino)propyl]phosphonamidic acid
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

6511.305 Da
Monoisotopic Mass

-34.9
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6512.3123 311.5
[M+Na]+ 6534.2942 311.5
[M-H]- 6510.2977 311.5
[M+NH4]+ 6529.3388 311.5
[M+K]+ 6550.2682 311.5
[M+H-H2O]+ 6494.3023 311.5
[M+HCOO]- 6556.3032 311.5
[M+CH3COO]- 6570.3189 311.5
[M+Na-2H]- 6532.2797 311.5
[M]+ 6511.3045 311.5
[M]- 6511.3055 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.