CID 16130142

(3-5)-hexadecylaminoacetate conjugated oligonucleotide(ptgcctggagctgcttgatgc)

Structural Information

Molecular Formula
C213H283N73O126P20
SMILES
CCCCCCCCCCCCCCCCOC(=O)CNP(=O)(O)OCC1C(CC(O1)N2C=C(C(=O)NC2=O)C)OP(=O)(O)OCC3C(CC(O3)N4C=NC5=C4N=C(NC5=O)N)OP(=O)(O)OCC6C(CC(O6)N7C=CC(=NC7=O)N)OP(=O)(O)OCC8C(CC(O8)N9C=CC(=NC9=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)O
InChI
InChI=1S/C213H283N73O126P20/c1-8-9-10-11-12-13-14-15-16-17-18-19-20-21-32-353-162(288)53-241-413(313,314)354-61-118-102(38-147(379-118)272-54-91(2)183(289)261-208(272)307)398-419(325,326)367-74-131-111(47-156(388-131)281-85-235-166-177(281)248-197(222)255-190(166)296)407-425(337,338)357-63-120-98(34-143(376-120)268-28-23-138(215)243-204(268)303)394-415(317,318)356-62-119-99(35-144(375-119)269-29-24-139(216)244-205(269)304)395-416(319,320)361-67-124-105(41-150(381-124)275-57-94(5)186(292)264-211(275)310)401-423(333,334)371-77-134-115(51-160(391-134)285-89-239-170-181(285)252-201(226)259-194(170)300)412-432(351,352)373-79-136-116(52-161(393-136)286-90-240-171-182(286)253-202(227)260-195(171)301)411-431(349,350)366-72-129-109(45-154(386-129)279-83-233-164-173(220)229-81-231-175(164)279)406-429(345,346)372-78-135-113(49-158(392-135)283-87-237-168-179(283)250-199(224)257-192(168)298)409-427(341,342)359-65-122-101(37-146(378-122)271-31-26-141(218)246-207(271)306)397-418(323,324)362-68-125-104(40-149(382-125)274-56-93(4)185(291)263-210(274)309)400-422(331,332)369-75-132-112(48-157(389-132)282-86-236-167-178(282)249-198(223)256-191(167)297)408-426(339,340)358-64-121-100(36-145(377-121)270-30-25-140(217)245-206(270)305)396-417(321,322)360-66-123-103(39-148(380-123)273-55-92(3)184(290)262-209(273)308)399-420(327,328)363-69-126-106(42-151(383-126)276-58-95(6)187(293)265-212(276)311)402-424(335,336)370-76-133-114(50-159(390-133)284-88-238-169-180(284)251-200(225)258-193(169)299)410-430(347,348)365-71-128-108(44-153(385-128)278-82-232-163-172(219)228-80-230-174(163)278)405-428(343,344)364-70-127-107(43-152(384-127)277-59-96(7)188(294)266-213(277)312)403-421(329,330)368-73-130-110(46-155(387-130)280-84-234-165-176(280)247-196(221)254-189(165)295)404-414(315,316)355-60-117-97(287)33-142(374-117)267-27-22-137(214)242-203(267)302/h22-31,54-59,80-90,97-136,142-161,287H,8-21,32-53,60-79H2,1-7H3,(H,315,316)(H,317,318)(H,319,320)(H,321,322)(H,323,324)(H,325,326)(H,327,328)(H,329,330)(H,331,332)(H,333,334)(H,335,336)(H,337,338)(H,339,340)(H,341,342)(H,343,344)(H,345,346)(H,347,348)(H,349,350)(H,351,352)(H2,214,242,302)(H2,215,243,303)(H2,216,244,304)(H2,217,245,305)(H2,218,246,306)(H2,219,228,230)(H2,220,229,231)(H2,241,313,314)(H,261,289,307)(H,262,290,308)(H,263,291,309)(H,264,292,310)(H,265,293,311)(H,266,294,312)(H3,221,247,254,295)(H3,222,248,255,296)(H3,223,249,256,297)(H3,224,250,257,298)(H3,225,251,258,299)(H3,226,252,259,300)(H3,227,253,260,301)
InChIKey
MLCNVQIQCWPWIW-UHFFFAOYSA-N
Compound name
[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-N-(2-hexadecoxy-2-oxoethyl)phosphonamidic acid
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

6498.2734 Da
Monoisotopic Mass

-34.3
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6499.2807 311.5
[M+Na]+ 6521.2626 311.5
[M-H]- 6497.2661 311.5
[M+NH4]+ 6516.3072 311.5
[M+K]+ 6537.2366 311.5
[M+H-H2O]+ 6481.2707 311.5
[M+HCOO]- 6543.2716 311.5
[M+CH3COO]- 6557.2873 311.5
[M+Na-2H]- 6519.2481 311.5
[M]+ 6498.2729 311.5
[M]- 6498.2739 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.