CID 16130141

(3-5)-octadecylamine conjugated oligonucleotide(ptgcctggagctgcttgatgc)

Structural Information

Molecular Formula
C213H285N73O124P20
SMILES
CCCCCCCCCCCCCCCCCCNP(=O)(O)OCC1C(CC(O1)N2C=C(C(=O)NC2=O)C)OP(=O)(O)OCC3C(CC(O3)N4C=NC5=C4N=C(NC5=O)N)OP(=O)(O)OCC6C(CC(O6)N7C=CC(=NC7=O)N)OP(=O)(O)OCC8C(CC(O8)N9C=CC(=NC9=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C(N=CN=C21)N)OP(=O)(O)OCC1C(CC(O1)N1C=C(C(=O)NC1=O)C)OP(=O)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)OP(=O)(O)OCC1C(CC(O1)N1C=CC(=NC1=O)N)O
InChI
InChI=1S/C213H285N73O124P20/c1-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-29-241-411(312,313)352-62-119-103(40-148(377-119)272-55-92(2)183(288)261-208(272)306)396-417(324,325)365-75-132-112(49-157(386-132)281-86-235-166-177(281)248-197(222)255-190(166)295)405-423(336,337)355-64-121-99(36-144(374-121)268-31-25-139(215)243-204(268)302)392-413(316,317)354-63-120-100(37-145(373-120)269-32-26-140(216)244-205(269)303)393-414(318,319)359-68-125-106(43-151(379-125)275-58-95(5)186(291)264-211(275)309)399-421(332,333)369-78-135-116(53-161(389-135)285-90-239-170-181(285)252-201(226)259-194(170)299)410-430(350,351)371-80-137-117(54-162(391-137)286-91-240-171-182(286)253-202(227)260-195(171)300)409-429(348,349)364-73-130-110(47-155(384-130)279-84-233-164-173(220)229-82-231-175(164)279)404-427(344,345)370-79-136-114(51-159(390-136)283-88-237-168-179(283)250-199(224)257-192(168)297)407-425(340,341)357-66-123-102(39-147(376-123)271-34-28-142(218)246-207(271)305)395-416(322,323)360-69-126-105(42-150(380-126)274-57-94(4)185(290)263-210(274)308)398-420(330,331)367-76-133-113(50-158(387-133)282-87-236-167-178(282)249-198(223)256-191(167)296)406-424(338,339)356-65-122-101(38-146(375-122)270-33-27-141(217)245-206(270)304)394-415(320,321)358-67-124-104(41-149(378-124)273-56-93(3)184(289)262-209(273)307)397-418(326,327)361-70-127-107(44-152(381-127)276-59-96(6)187(292)265-212(276)310)400-422(334,335)368-77-134-115(52-160(388-134)284-89-238-169-180(284)251-200(225)258-193(169)298)408-428(346,347)363-72-129-109(46-154(383-129)278-83-232-163-172(219)228-81-230-174(163)278)403-426(342,343)362-71-128-108(45-153(382-128)277-60-97(7)188(293)266-213(277)311)401-419(328,329)366-74-131-111(48-156(385-131)280-85-234-165-176(280)247-196(221)254-189(165)294)402-412(314,315)353-61-118-98(287)35-143(372-118)267-30-24-138(214)242-203(267)301/h24-28,30-34,55-60,81-91,98-137,143-162,287H,8-23,29,35-54,61-80H2,1-7H3,(H,314,315)(H,316,317)(H,318,319)(H,320,321)(H,322,323)(H,324,325)(H,326,327)(H,328,329)(H,330,331)(H,332,333)(H,334,335)(H,336,337)(H,338,339)(H,340,341)(H,342,343)(H,344,345)(H,346,347)(H,348,349)(H,350,351)(H2,214,242,301)(H2,215,243,302)(H2,216,244,303)(H2,217,245,304)(H2,218,246,305)(H2,219,228,230)(H2,220,229,231)(H2,241,312,313)(H,261,288,306)(H,262,289,307)(H,263,290,308)(H,264,291,309)(H,265,292,310)(H,266,293,311)(H3,221,247,254,294)(H3,222,248,255,295)(H3,223,249,256,296)(H3,224,250,257,297)(H3,225,251,258,298)(H3,226,252,259,299)(H3,227,253,260,300)
InChIKey
YVXRSIKCCBPZAH-UHFFFAOYSA-N
Compound name
[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphoryl]oxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-N-octadecylphosphonamidic acid
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

1
References

0
Patents

6468.2993 Da
Monoisotopic Mass

-33.1
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 6469.3066 311.5
[M+Na]+ 6491.2885 311.5
[M-H]- 6467.2920 311.5
[M+NH4]+ 6486.3331 311.5
[M+K]+ 6507.2625 311.5
[M+H-H2O]+ 6451.2966 311.5
[M+HCOO]- 6513.2975 311.5
[M+CH3COO]- 6527.3132 311.5
[M+Na-2H]- 6489.2740 311.5
[M]+ 6468.2988 311.5
[M]- 6468.2998 311.5
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

literature stripe

Patent stripe

No patent data available for this compound.