CID 135508809

Ctcccg phosphorothioate oligonucleotide

Structural Information

Molecular Formula
C56H75N19O32P6S6
SMILES
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=S)(O)OC3CC(OC3COP(=S)(O)O)N4C=CC(=NC4=O)N)OP(=O)(OCC5C(CC(O5)N6C=CC(=NC6=O)N)OP(=S)(O)OCC7C(CC(O7)N8C=CC(=NC8=O)N)OP(=S)(O)OCC9C(CC(O9)N1C=CC(=NC1=O)N)OP(=S)(O)OCC1C(CC(O1)N1C=NC2=C1N=C(NC2=O)N)O)S
InChI
InChI=1S/C56H75N19O32P6S6/c1-24-16-74(56(83)69-49(24)77)46-15-30(36(102-46)22-96-110(87,116)103-26-11-42(70-6-2-37(57)63-52(70)79)98-32(26)18-91-108(84,85)114)107-113(90,119)95-21-35-29(14-45(101-35)73-9-5-40(60)66-55(73)82)106-112(89,118)94-20-34-28(13-44(100-34)72-8-4-39(59)65-54(72)81)105-111(88,117)93-19-33-27(12-43(99-33)71-7-3-38(58)64-53(71)80)104-109(86,115)92-17-31-25(76)10-41(97-31)75-23-62-47-48(75)67-51(61)68-50(47)78/h2-9,16,23,25-36,41-46,76H,10-15,17-22H2,1H3,(H,86,115)(H,87,116)(H,88,117)(H,89,118)(H,90,119)(H2,57,63,79)(H2,58,64,80)(H2,59,65,81)(H2,60,66,82)(H,69,77,83)(H2,84,85,114)(H3,61,67,68,78)
InChIKey
OWFJZOSERXEGPS-UHFFFAOYSA-N
Compound name
1-[4-[[3-[[3-[[3-[[5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-(4-amino-2-oxopyrimidin-1-yl)oxolan-2-yl]methoxy-sulfanylphosphoryl]oxy-5-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-(dihydroxyphosphinothioyloxymethyl)oxolan-3-yl]oxy-hydroxyphosphinothioyl]oxymethyl]oxolan-2-yl]-5-methylpyrimidine-2,4-dione
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

0
References

0
Patents

1903.1576 Da
Monoisotopic Mass

-4.6
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 1904.1649 305.4
[M+Na]+ 1926.1468 321.5
[M-H]- 1902.1503 309.9
[M+NH4]+ 1921.1914 311.7
[M+K]+ 1942.1208 314.3
[M+H-H2O]+ 1886.1549 305.4
[M+HCOO]- 1948.1558 311.1
[M+CH3COO]- 1962.1715 311.6
[M+Na-2H]- 1924.1323 312.5
[M]+ 1903.1571 320.9
[M]- 1903.1581 320.9
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.