CID 135508808

Cgccca phosphorothioate oligonucleotide

Structural Information

Molecular Formula
C56H74N22O30P6S6
SMILES
C1C(C(OC1N2C=NC3=C(N=CN=C32)N)COP(=S)(O)OC4CC(OC4COP(=S)(O)OC5CC(OC5COP(=S)(O)OC6CC(OC6COP(=S)(O)OC7CC(OC7COP(=O)(OC8CC(OC8COP(=S)(O)O)N9C=CC(=NC9=O)N)S)N1C=NC2=C1N=C(NC2=O)N)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)N1C=CC(=NC1=O)N)O
InChI
InChI=1S/C56H74N22O30P6S6/c57-36-1-5-73(53(81)67-36)41-10-25(31(99-41)16-92-109(85,86)115)104-111(88,117)97-20-35-29(14-45(103-35)78-23-66-47-50(78)71-52(62)72-51(47)80)108-114(91,120)96-19-34-28(13-44(102-34)76-8-4-39(60)70-56(76)84)107-113(90,119)95-18-33-27(12-43(101-33)75-7-3-38(59)69-55(75)83)106-112(89,118)94-17-32-26(11-42(100-32)74-6-2-37(58)68-54(74)82)105-110(87,116)93-15-30-24(79)9-40(98-30)77-22-65-46-48(61)63-21-64-49(46)77/h1-8,21-35,40-45,79H,9-20H2,(H,87,116)(H,88,117)(H,89,118)(H,90,119)(H,91,120)(H2,57,67,81)(H2,58,68,82)(H2,59,69,83)(H2,60,70,84)(H2,61,63,64)(H2,85,86,115)(H3,62,71,72,80)
InChIKey
BKDQHKPDQIQTSV-UHFFFAOYSA-N
Compound name
2-amino-9-[4-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[5-(4-amino-2-oxopyrimidin-1-yl)-3-[[5-(6-aminopurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxyoxolan-2-yl]methoxy-hydroxyphosphinothioyl]oxy-5-[[[5-(4-amino-2-oxopyrimidin-1-yl)-2-(dihydroxyphosphinothioyloxymethyl)oxolan-3-yl]oxy-sulfanylphosphoryl]oxymethyl]oxolan-2-yl]-1H-purin-6-one
Related CIDs

2D Structure

compound 2d structure
1
Annotation Hits

0
References

0
Patents

1912.1691 Da
Monoisotopic Mass

-4.6
XlogP (predicted)

Profile

Predicted Collision Cross Section

Adduct m/z Predicted CCS (Ų)
[M+H]+ 1913.1764 295.4
[M+Na]+ 1935.1583 311.0
[M-H]- 1911.1618 297.7
[M+NH4]+ 1930.2029 301.1
[M+K]+ 1951.1323 304.9
[M+H-H2O]+ 1895.1664 295.2
[M+HCOO]- 1957.1673 300.7
[M+CH3COO]- 1971.1830 301.4
[M+Na-2H]- 1933.1438 300.7
[M]+ 1912.1686 311.6
[M]- 1912.1696 311.6
m/z: mass to charge ratio of the adduct.
Predicted Collision Cross Section (CCS) values (Ų) per adduct calculated using CCSbase.

Literature stripe

No literature data available for this compound.

Patent stripe

No patent data available for this compound.